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Release #127

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7bd01d6
P Create initial DataProcessor project
astruebi Feb 13, 2024
bda3713
chance the working directory if necessary
Flow191 Feb 21, 2024
26a59a7
Rename and redirect time/date relevant functions
Flow191 Feb 21, 2024
7174538
Add warnings if any tables are not found in DB
Flow191 Feb 21, 2024
09d5350
Return table names in dbListTables() function
Flow191 Feb 21, 2024
84d9b87
Rename and redirect logging relevant functions
Flow191 Feb 21, 2024
235ab37
Rename and redirect table relevant functions
Flow191 Feb 21, 2024
fe92151
Remove script lib_misc and redirect tests
Flow191 Feb 21, 2024
a59c375
Rename and redirect sample resource relevant functions
Flow191 Feb 21, 2024
de59e62
Redirect some functions to helper_functions.R
Flow191 Feb 21, 2024
6de37a8
Merge pull request #104 from medizininformatik-initiative/103-kds2db-…
astruebi Feb 21, 2024
7dec1bc
K Change path for toml files
Flow191 Feb 21, 2024
1ca604a
U Normalize relative path
Flow191 Feb 21, 2024
4b46dca
Merge pull request #106 from medizininformatik-initiative/105-kds2db-…
astruebi Feb 21, 2024
5e79a96
Merge pull request #107 from medizininformatik-initiative/84-redcap-d…
astruebi Feb 21, 2024
2b808ac
Merge pull request #108 from medizininformatik-initiative/release
astruebi Feb 21, 2024
8d8925b
FE Delete duplicate code
Flow191 Feb 21, 2024
d0957da
FE Change Path to toml files
Flow191 Feb 21, 2024
656b21c
Merge pull request #110 from medizininformatik-initiative/106-db2fron…
astruebi Feb 21, 2024
a3def81
DB update init script with new tables
reuschem Feb 21, 2024
94646a3
Merge pull request #111 from medizininformatik-initiative/109-db-verb…
astruebi Feb 21, 2024
5590811
Rename DB to amts_db
SebStaeubert Feb 22, 2024
2427ba8
U Fix missing URL_PORT_SPEC variable
astruebi Feb 19, 2024
e2ac38c
Merge pull request #113 from medizininformatik-initiative/93-kds2db-e…
Flow191 Feb 22, 2024
b85644e
Rename DB to amts_db, part 2
SebStaeubert Feb 22, 2024
a5a41ac
Config file for redcap mail changed with dummy values
SebStaeubert Feb 22, 2024
4c7f794
Add hint to change SALT in redcap database.php
SebStaeubert Feb 22, 2024
32a1b7e
DB fix script
reuschem Feb 22, 2024
d09c661
Merge pull request #115 from medizininformatik-initiative/114-db-fix-…
astruebi Feb 22, 2024
9a920b1
U Add error stop function
Flow191 Feb 22, 2024
baf95d2
K use new stopOnError() function
Flow191 Feb 22, 2024
e2508cd
U Print error in red color in console output
Flow191 Feb 22, 2024
cc78c37
K Remove STOP variable
Flow191 Feb 22, 2024
6be5d65
Add break in stopOnError() function
Flow191 Feb 22, 2024
2f59ea6
Merge pull request #116 from medizininformatik-initiative/112-ksd2db-…
astruebi Feb 22, 2024
9676a9b
Installation instructions added
SebStaeubert Feb 22, 2024
3021a8d
Update README.md
SebStaeubert Feb 22, 2024
47f0190
Update Install.md
SebStaeubert Feb 22, 2024
3706a16
Update php.ini
SebStaeubert Feb 22, 2024
583ff25
Update Readme.md
SebStaeubert Feb 22, 2024
1dcf447
DB change itemnames
reuschem Feb 22, 2024
1f31495
Merge pull request #117 from medizininformatik-initiative/114-db-fix-…
SebStaeubert Feb 22, 2024
8cc0f7e
DB change call to select
reuschem Feb 22, 2024
a29bc24
Merge pull request #118 from medizininformatik-initiative/114-db-fix-…
SebStaeubert Feb 22, 2024
7321a8c
DB bigger med_code_system varchar
reuschem Feb 22, 2024
b2a1856
Update db2frontend_config.toml
SebStaeubert Feb 22, 2024
cee91bd
Update dbDatatoREDCap.R
SebStaeubert Feb 22, 2024
2aa3083
Merge pull request #119 from medizininformatik-initiative/114-db-fix-…
SebStaeubert Feb 22, 2024
6b349ad
libsecret-1-0 added to R environment
SebStaeubert Feb 22, 2024
ba39858
Merge pull request #122 from medizininformatik-initiative/90-dataproc…
Flow191 Feb 23, 2024
9c46b22
Create README.md
astruebi Feb 23, 2024
d3dd986
Merge pull request #123 from medizininformatik-initiative/astruebi-pa…
Flow191 Feb 23, 2024
821e36d
Create Readme.md
SebStaeubert Feb 23, 2024
38aff1c
Update Readme.md
SebStaeubert Feb 23, 2024
92bd589
Update Install.md
SebStaeubert Feb 23, 2024
77f8200
Update Install.md
SebStaeubert Feb 23, 2024
bb649f6
Add Redcap url and token in toml file
Flow191 Feb 23, 2024
d57d137
Chance working directory to main directory
Flow191 Feb 23, 2024
46adc90
Add global variables redcap_url and token in function redcapConnection()
Flow191 Feb 23, 2024
1b9bac0
Merge pull request #125 from medizininformatik-initiative/120-redcap-…
Flow191 Feb 23, 2024
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U Print error in red color in console output
Flow191 committed Feb 22, 2024

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commit e2508cd2a7c28b9563ff30e3e57fe5baf31b441f
2 changes: 1 addition & 1 deletion R-etlutils/etlutils/R/lib_clock.R
Original file line number Diff line number Diff line change
@@ -263,7 +263,7 @@ Clock = setRefClass(
last_row <- max(which(.history$state == 'RUNNING'))
# add end time, error and state to this row
.history[last_row, 'end'] <<- now_
.history[last_row, 'error'] <<- if (inherits(err, 'try-error')) err else ''
.history[last_row, 'error'] <<- if (inherits(err, 'try-error')) cat_red(err) else ''
.history[last_row, 'state'] <<- if (inherits(err, 'try-error')) 'ERROR' else 'OK'
# if 0 < verbose print some messages
if (0 < verbose) {