Bump version and update readme.

README.rst

@@ -304,97 +304,11 @@ A lower-level Faidx class is also available:
 -  Start and end coordinates are 1-based.
 
 
-Changes
+Changelog
 -------
-*New in version 0.3.4*:
 
-- `--delimiter` option for cli script and `split_char` argument for `Fasta` and `Faidx`
-
-*New in version 0.3.3*:
-
-- `--split-files` option writes each returned sequence to an individual file. Names are generated based on the sequence name and region coordinates.
-- `--stats` option prints the name and sequence length for each entry, suitable for use as a UCSC-style [chrom.sizes](http://genome.ucsc.edu/goldenpath/help/hg19.chrom.sizes) file.
-- Sequence `longname` attribute allows access to "chr:start-end (complement)" formatted names
-
-
-*New in version 0.3.2*:
-
-- Fasta `__getitem__` no longer initializes new FastaRecord classes
-- Faidx `read_ahead` attribute implementaion avoids unnecessary disk hits (`#34 <https://github.com/mdshw5/pyfaidx/issues/34>`_)
-
-*New in version 0.3.1*:
-
-- Fasta can now accept an integer index in addition to string keys.
-
-*New in version 0.3.0*:
-
-- FastaRecord now works as a line-based iterator (`#30 <https://github.com/mdshw5/pyfaidx/issues/30>`_)
-- Added MutableFastaRecord class that allows same-length in-place replacement for FASTA (`#29 <https://github.com/mdshw5/pyfaidx/issues/29>`_)
-
-*New in version 0.2.9*:
-
-- Added read-ahead buffer for fast sequential sequence access (`#26 <https://github.com/mdshw5/pyfaidx/issues/26>`_)
-- Fixed a condition where `as_raw` parameter was not respected (`#27 <https://github.com/mdshw5/pyfaidx/issues/27>`_)
-
-*New in version 0.2.8*:
-
-- Small internal refactoring
-
-*New in version 0.2.7*:
-
-- Faidx and Fasta `strict_bounds` bounds checking logic is more correct
-- Fasta `default-seq` parameter now works
-- CLI script `faidx` now takes a BED file for fetching regions from a fasta
-
-*New in version 0.2.6*:
-
-- Faidx no longer has `raw_index` attribute or `rebuild_index` method (reduce memory footprint)
-- Faidx index memory usage decreased by 31-40%
-- .fai creation is streaming, performance increase for very large indices
-- Possible speed regression when performing many small queries using `Fasta` class
-
-*New in version 0.2.5*:
-
-- Fasta and Faidx can take `default-seq` in addition to `as_raw`, `key_function`,
-  and `strict_bounds` parameters.
-- Fixed issue `#20 <https://github.com/mdshw5/pyfaidx/issues/20>`_
-- Faidx has attribute `raw_index` which is a list representing the fai file.
-- Faidx has `rebuild_index` and `write_fai` functions for building and writing
-  `raw_index` to file.
-- Extra test cases, and test cases against Biopython SeqIO
-
-*New in version 0.2.4*:
-
-- Faidx index order is stable and non-random
-
-*New in version 0.2.3*:
-
-- Fixed a bug affecting Python 2.6
-
-*New in version 0.2.2*:
-
-- `Fasta` can receive the `strict_bounds` argument
-
-*New in version 0.2.1*:
-
-- `FastaRecord` str attribute returns a string
-- `Fasta` is now an iterator
-
-*New in version 0.2.0*:
-
-- `as_raw` keyword arg for `Faidx` and `Fasta` allows a simple string return type
-- `__str__` method for `FastaRecord` returns entire contig sequence
-
-*New in version 0.1.9*:
-
-- line wrapping of ``faidx`` is set based on the wrapping of the indexed
-  fasta file
-- added ``--reverse`` and ``--complement`` arguments to ``faidx``
-
-*New in version 0.1.8*:
-
-- ``key_function`` keyword argument to ``Fasta`` allows lookup based on function
-  output
+Please see the `releases <https://github.com/mdshw5/pyfaidx/releases>`_ for a
+comprehensive list of version changes.
 
 Acknowledgements
 ----------------

pyfaidx/__init__.py

@@ -20,7 +20,7 @@
 
 dna_bases = re.compile(r'([ACTGNactgnYRWSKMDVHBXyrwskmdvhbx]+)')
 
-__version__ = '0.3.4'
+__version__ = '0.3.5'
 
 
 class FastaIndexingError(Exception):