CI #57
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| # This file is part of REANA. | |
| # Copyright (C) 2020, 2021, 2023, 2024 CERN. | |
| # | |
| # REANA is free software; you can redistribute it and/or modify it | |
| # under the terms of the MIT License; see LICENSE file for more details. | |
| name: CI | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '0 7 * * 1' | |
| jobs: | |
| lint-commitlint: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Node | |
| uses: actions/setup-node@v4 | |
| - name: Install commitlint | |
| run: | | |
| npm install conventional-changelog-conventionalcommits | |
| npm install commitlint@latest | |
| - name: Check commit message compliance of the recently pushed commit | |
| if: github.event_name == 'push' | |
| run: | | |
| ./run-tests.sh --check-commitlint HEAD~1 HEAD | |
| - name: Check commit message compliance of the pull request | |
| if: github.event_name == 'pull_request' | |
| run: | | |
| ./run-tests.sh --check-commitlint ${{ github.event.pull_request.base.sha }} ${{ github.event.pull_request.head.sha }} ${{ github.event.pull_request.number }} | |
| lint-shellcheck: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Runs shell script static analysis | |
| run: | | |
| sudo apt-get install shellcheck | |
| ./run-tests.sh --check-shellcheck | |
| cwl-validate: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Validate CWL spec | |
| uses: reanahub/reana-github-actions/local-validate@v1 | |
| with: | |
| reana_specs: reana-cwl*.yaml | |
| cwl-local-run: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Run CWL locally | |
| uses: reanahub/reana-github-actions/local-run@v1 | |
| with: | |
| commands: | | |
| rm -rf cwl-local-run && mkdir -p cwl-local-run && cd cwl-local-run | |
| pip install cwltool | |
| cp -a ../code ../data . && cp ../workflow/cwl/helloworld-job.yml . | |
| cwltool --quiet --outdir="./results" ../workflow/cwl/helloworld.cwl helloworld-job.yml | |
| grep -q 'Hello Joe Bloggs!' results/greetings.txt | |
| cd .. && rm -rf cwl-local-run | |
| serial-validate: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Validate serial spec | |
| uses: reanahub/reana-github-actions/local-validate@v1 | |
| with: | |
| reana_specs: reana.yaml reana-htcondorcern.yaml reana-slurmcern.yaml | |
| serial-local-run: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Run Serial locally | |
| uses: reanahub/reana-github-actions/local-run@v1 | |
| with: | |
| commands: | | |
| rm -rf results && mkdir results | |
| docker run -i --rm -v `pwd`/code:/code -v `pwd`/data:/data -v `pwd`/results:/results docker.io/library/python:2.7-slim python /code/helloworld.py --sleeptime 0 | |
| grep -q 'Hello Joe Bloggs!' results/greetings.txt | |
| rm -rf results | |
| snakemake-validate: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Validate Snakemake spec | |
| uses: reanahub/reana-github-actions/local-validate@v1 | |
| with: | |
| reana_specs: reana-snakemake*.yaml | |
| snakemake-local-run: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Run Snakemake locally | |
| uses: reanahub/reana-github-actions/local-run@v1 | |
| with: | |
| commands: | | |
| rm -rf snakemake-local-run && mkdir -p snakemake-local-run && cd snakemake-local-run | |
| pip install 'pulp<2.8' snakemake | |
| cp -a ../code ../data . | |
| snakemake -s ../workflow/snakemake/Snakefile --configfile ../workflow/snakemake/inputs.yaml -p --cores 1 | |
| grep -q 'Hello Joe Bloggs!' results/greetings.txt | |
| cd .. && rm -rf snakemake-local-run | |
| yadage-validate: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Validate Yadage spec | |
| uses: reanahub/reana-github-actions/local-validate@v1 | |
| with: | |
| reana_specs: reana-yadage*.yaml | |
| yadage-local-run: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Run Yadage locally | |
| uses: reanahub/reana-github-actions/local-run@v1 | |
| with: | |
| commands: | | |
| rm -rf yadage-local-run/yadage-inputs && mkdir -p yadage-local-run/yadage-inputs && cd yadage-local-run | |
| pip install yadage | |
| cp -a ../code ../data yadage-inputs | |
| yadage-run . ../workflow/yadage/workflow.yaml -p sleeptime=0 -p inputfile=data/names.txt -p helloworld=code/helloworld.py -d initdir=`pwd`/yadage-inputs | |
| grep -q 'Hello Joe Bloggs!' helloworld/greetings.txt | |
| cd .. && rm -rf yadage-local-run |