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10X Visium model integration #135
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Rewrite descriptions to avoid ':', which was being parsed as a separator during 'schematic manifest get' calls
To support documentation, having separate folders for each processing level allows separate pages to be created
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@Bankso is the empty column at the end expected for all these files? The rest looks good to me!
That's a good question - which files do you mean? The final columns for the annotationProperty and valid value CSVs are Validation Rules and nonpreferred_values, respectively. In a lot of situations, we don't end up having values in those columns. For the google sheet templates, I think the empty right-hand columns are ignored when the CSV gets downloaded |
Ah that clarifies it, makes sense! |
Fixes #134
Changelog
A separate branch and PR will be used to add the documentation updates at a later date.
Google sheet links to models:
10X Visium RNA Spatial Profiling Level 1
10X Visium RNA Spatial Profiling Level 2
10X Visium RNA Spatial Profiling Level 3
10X Visium RNA Spatial Profiling Level 4
10X Visium Spatial Profiling Auxiliary Files