Added 3D ATAC-PALM assay to assay.csv #56

	name: build-jsonld

	on:
	pull_request:
	branches: [main]
	types: [opened]
	paths:
	- 'modules/**'
	workflow_dispatch:

	env:
	schema_filename: mc2.model.csv

	jobs:
	build:
	runs-on: ubuntu-20.04
	strategy:
	matrix:
	schematic-version: [ 24.5.1 ]

	steps:
	- name: Install System Dependencies
	run: \|
	sudo add-apt-repository ppa:deadsnakes/ppa
	sudo apt-get update
	sudo apt-get install -y pip python3.10-venv libcurl4-openssl-dev

	- uses: actions/[email protected]
	with:
	ref: ${{ github.event.pull_request.head.ref }}
	persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal access token.
	fetch-depth: 0 # otherwise, there would be errors pushing refs to the destination repository

	- name: Update valid values
	run: \|
	python -m pip install --upgrade pip
	pip install pyyaml pandas
	python update_valid_values.py

	- name: Install schematic and convert schema
	shell: bash
	run: \|
	python3.10 -m venv .venv
	chmod 755 .venv/bin/activate
	source .venv/bin/activate
	pip3.10 install schematicpy==${{ matrix.schematic-version }} ipython==8.18.1
	make CSV=$schema_filename

	- name: Commit files
	run: \|
	git config --local user.email "[email protected]"
	git config --local user.name "mc2center-bot[bot]"
	git commit -m "build jsonld" -a

	- name: Push changes
	uses: ad-m/github-push-action@master
	with:
	github_token: ${{ secrets.GH_TOKEN }}
	branch: ${{ github.event.pull_request.head.ref }}

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