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@mberriman
mberriman authored Mar 25, 2024
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<summary>What can I do with an AlphaFold protein structure?<br>
To download the raw files for an AlphaFold protein structure you found in WormBase ParaSite:</summary>

1. Take a note of the AlphaFold accession ID, in our case it's: AF-A0A074Z666-F1
2. Go to the AlphaFold web-page and search for it (https://alphafold.ebi.ac.uk/entry/A0A074Z666).
3. At the top of the page you can downlaod the prediction in PDF, mmCIF or Predicted Align Error format.
<li> 1. Take a note of the AlphaFold accession ID, in our case it's: AF-A0A074Z666-F1</li>
<li>2. Go to the AlphaFold web-page and search for it (https://alphafold.ebi.ac.uk/entry/A0A074Z666).</li>
<li>3. At the top of the page you can downlaod the prediction in PDF, mmCIF or Predicted Align Error format.</li>

Then you could use the structure file to perform subsequent analyses. Online tools that can be used with the downloaded structures from AlphaFold:

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