Codon Bias

These files are the framework for analyzing bias in synonymous mutations in the human genome. The files are broken up into simulations (for theoretical work) and scripts (for analyzing real data). Most of the data was obtained from the ExAC and gnomAD databases,generously provided by the MacArthur lab.

Getting Started

You can clone the repository:

git clone http://github.com/mattjones315/CodonBias

or fork it into your own profile.

Installing

We require Julia >= 0.6.1, R >= 3.4, and Python >= 3.6. Still working on putting together an anaconda environment for this repo, stay tuned...

Authors

• Matt Jones

License

This project is licensed under the MIT License - LICENSE.md coming for more details.