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matsunagalab · Jul 16, 2023 · 84b8418 · 84b8418
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diff --git a/4idl_all/toppar/._par_all36_carb.prm b/4idl_all/toppar/._par_all36_carb.prm
diff --git a/4idl_all/toppar/._par_all36_cgenff.prm b/4idl_all/toppar/._par_all36_cgenff.prm
diff --git a/4idl_all/toppar/._par_all36_lipid.prm b/4idl_all/toppar/._par_all36_lipid.prm
diff --git a/4idl_all/toppar/._par_all36_na.prm b/4idl_all/toppar/._par_all36_na.prm
diff --git a/4idl_all/toppar/._par_all36m_prot.prm b/4idl_all/toppar/._par_all36m_prot.prm
diff --git a/4idl_all/toppar/._par_interface.prm b/4idl_all/toppar/._par_interface.prm
diff --git a/4idl_all/toppar/._tip216.crd b/4idl_all/toppar/._tip216.crd
diff --git a/4idl_all/toppar/._top_all36_carb.rtf b/4idl_all/toppar/._top_all36_carb.rtf
diff --git a/4idl_all/toppar/._top_all36_cgenff.rtf b/4idl_all/toppar/._top_all36_cgenff.rtf
diff --git a/4idl_all/toppar/._top_all36_lipid.rtf b/4idl_all/toppar/._top_all36_lipid.rtf
diff --git a/4idl_all/toppar/._top_all36_na.rtf b/4idl_all/toppar/._top_all36_na.rtf
diff --git a/4idl_all/toppar/._top_all36_prot.rtf b/4idl_all/toppar/._top_all36_prot.rtf
diff --git a/4idl_all/toppar/._top_interface.rtf b/4idl_all/toppar/._top_interface.rtf
diff --git a/4idl_all/toppar/._toppar_all36_carb_glycolipid.str b/4idl_all/toppar/._toppar_all36_carb_glycolipid.str
diff --git a/4idl_all/toppar/._toppar_all36_carb_glycopeptide.str b/4idl_all/toppar/._toppar_all36_carb_glycopeptide.str
diff --git a/4idl_all/toppar/._toppar_all36_carb_imlab.str b/4idl_all/toppar/._toppar_all36_carb_imlab.str
diff --git a/4idl_all/toppar/._toppar_all36_label_fluorophore.str b/4idl_all/toppar/._toppar_all36_label_fluorophore.str
diff --git a/4idl_all/toppar/._toppar_all36_label_spin.str b/4idl_all/toppar/._toppar_all36_label_spin.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_archaeal.str b/4idl_all/toppar/._toppar_all36_lipid_archaeal.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_bacterial.str b/4idl_all/toppar/._toppar_all36_lipid_bacterial.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_cardiolipin.str b/4idl_all/toppar/._toppar_all36_lipid_cardiolipin.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_cholesterol.str b/4idl_all/toppar/._toppar_all36_lipid_cholesterol.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_dag.str b/4idl_all/toppar/._toppar_all36_lipid_dag.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_detergent.str b/4idl_all/toppar/._toppar_all36_lipid_detergent.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_ether.str b/4idl_all/toppar/._toppar_all36_lipid_ether.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_hmmm.str b/4idl_all/toppar/._toppar_all36_lipid_hmmm.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_inositol.str b/4idl_all/toppar/._toppar_all36_lipid_inositol.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_lps.str b/4idl_all/toppar/._toppar_all36_lipid_lps.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_miscellaneous.str b/4idl_all/toppar/._toppar_all36_lipid_miscellaneous.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_model.str b/4idl_all/toppar/._toppar_all36_lipid_model.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_prot.str b/4idl_all/toppar/._toppar_all36_lipid_prot.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_sphingo.str b/4idl_all/toppar/._toppar_all36_lipid_sphingo.str
diff --git a/4idl_all/toppar/._toppar_all36_lipid_yeast.str b/4idl_all/toppar/._toppar_all36_lipid_yeast.str
diff --git a/4idl_all/toppar/._toppar_all36_na_nad_ppi.str b/4idl_all/toppar/._toppar_all36_na_nad_ppi.str
diff --git a/4idl_all/toppar/._toppar_all36_na_rna_modified.str b/4idl_all/toppar/._toppar_all36_na_rna_modified.str
diff --git a/4idl_all/toppar/._toppar_all36_nano_lig.str b/4idl_all/toppar/._toppar_all36_nano_lig.str
diff --git a/4idl_all/toppar/._toppar_all36_nanolig_patch.str b/4idl_all/toppar/._toppar_all36_nanolig_patch.str
diff --git a/4idl_all/toppar/._toppar_all36_polymer_solvent.str b/4idl_all/toppar/._toppar_all36_polymer_solvent.str
diff --git a/4idl_all/toppar/._toppar_all36_prot_arg0.str b/4idl_all/toppar/._toppar_all36_prot_arg0.str
diff --git a/4idl_all/toppar/._toppar_all36_prot_c36m_d_aminoacids.str b/4idl_all/toppar/._toppar_all36_prot_c36m_d_aminoacids.str
diff --git a/4idl_all/toppar/._toppar_all36_prot_fluoro_alkanes.str b/4idl_all/toppar/._toppar_all36_prot_fluoro_alkanes.str
diff --git a/4idl_all/toppar/._toppar_all36_prot_heme.str b/4idl_all/toppar/._toppar_all36_prot_heme.str
diff --git a/4idl_all/toppar/._toppar_all36_prot_modify_res.str b/4idl_all/toppar/._toppar_all36_prot_modify_res.str
diff --git a/4idl_all/toppar/._toppar_all36_prot_na_combined.str b/4idl_all/toppar/._toppar_all36_prot_na_combined.str
diff --git a/4idl_all/toppar/._toppar_all36_prot_retinol.str b/4idl_all/toppar/._toppar_all36_prot_retinol.str
diff --git a/4idl_all/toppar/._toppar_all36_synthetic_polymer.str b/4idl_all/toppar/._toppar_all36_synthetic_polymer.str
diff --git a/4idl_all/toppar/._toppar_all36_synthetic_polymer_patch.str b/4idl_all/toppar/._toppar_all36_synthetic_polymer_patch.str
diff --git a/4idl_all/toppar/._toppar_dum_noble_gases.str b/4idl_all/toppar/._toppar_dum_noble_gases.str
diff --git a/4idl_all/toppar/._toppar_ions_won.str b/4idl_all/toppar/._toppar_ions_won.str
diff --git a/4idl_all/toppar/._toppar_water_ions.str b/4idl_all/toppar/._toppar_water_ions.str
diff --git a/4idl_dihedral/toppar/._par_all36_carb.prm b/4idl_dihedral/toppar/._par_all36_carb.prm
diff --git a/4idl_dihedral/toppar/._par_all36_cgenff.prm b/4idl_dihedral/toppar/._par_all36_cgenff.prm
diff --git a/4idl_dihedral/toppar/._par_all36_lipid.prm b/4idl_dihedral/toppar/._par_all36_lipid.prm
diff --git a/4idl_dihedral/toppar/._par_all36_na.prm b/4idl_dihedral/toppar/._par_all36_na.prm
diff --git a/4idl_dihedral/toppar/._par_all36m_prot.prm b/4idl_dihedral/toppar/._par_all36m_prot.prm
diff --git a/4idl_dihedral/toppar/._par_interface.prm b/4idl_dihedral/toppar/._par_interface.prm
diff --git a/4idl_dihedral/toppar/._tip216.crd b/4idl_dihedral/toppar/._tip216.crd
diff --git a/4idl_dihedral/toppar/._top_all36_carb.rtf b/4idl_dihedral/toppar/._top_all36_carb.rtf
diff --git a/4idl_dihedral/toppar/._top_all36_cgenff.rtf b/4idl_dihedral/toppar/._top_all36_cgenff.rtf
diff --git a/4idl_dihedral/toppar/._top_all36_lipid.rtf b/4idl_dihedral/toppar/._top_all36_lipid.rtf
diff --git a/4idl_dihedral/toppar/._top_all36_na.rtf b/4idl_dihedral/toppar/._top_all36_na.rtf
diff --git a/4idl_dihedral/toppar/._top_all36_prot.rtf b/4idl_dihedral/toppar/._top_all36_prot.rtf
diff --git a/4idl_dihedral/toppar/._top_interface.rtf b/4idl_dihedral/toppar/._top_interface.rtf
diff --git a/4idl_dihedral/toppar/._toppar_all36_carb_glycolipid.str b/4idl_dihedral/toppar/._toppar_all36_carb_glycolipid.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_carb_glycopeptide.str b/4idl_dihedral/toppar/._toppar_all36_carb_glycopeptide.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_carb_imlab.str b/4idl_dihedral/toppar/._toppar_all36_carb_imlab.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_label_fluorophore.str b/4idl_dihedral/toppar/._toppar_all36_label_fluorophore.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_label_spin.str b/4idl_dihedral/toppar/._toppar_all36_label_spin.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_archaeal.str b/4idl_dihedral/toppar/._toppar_all36_lipid_archaeal.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_bacterial.str b/4idl_dihedral/toppar/._toppar_all36_lipid_bacterial.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_cardiolipin.str b/4idl_dihedral/toppar/._toppar_all36_lipid_cardiolipin.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_cholesterol.str b/4idl_dihedral/toppar/._toppar_all36_lipid_cholesterol.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_dag.str b/4idl_dihedral/toppar/._toppar_all36_lipid_dag.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_detergent.str b/4idl_dihedral/toppar/._toppar_all36_lipid_detergent.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_ether.str b/4idl_dihedral/toppar/._toppar_all36_lipid_ether.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_hmmm.str b/4idl_dihedral/toppar/._toppar_all36_lipid_hmmm.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_inositol.str b/4idl_dihedral/toppar/._toppar_all36_lipid_inositol.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_lps.str b/4idl_dihedral/toppar/._toppar_all36_lipid_lps.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_miscellaneous.str b/4idl_dihedral/toppar/._toppar_all36_lipid_miscellaneous.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_model.str b/4idl_dihedral/toppar/._toppar_all36_lipid_model.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_prot.str b/4idl_dihedral/toppar/._toppar_all36_lipid_prot.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_sphingo.str b/4idl_dihedral/toppar/._toppar_all36_lipid_sphingo.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_lipid_yeast.str b/4idl_dihedral/toppar/._toppar_all36_lipid_yeast.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_na_nad_ppi.str b/4idl_dihedral/toppar/._toppar_all36_na_nad_ppi.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_na_rna_modified.str b/4idl_dihedral/toppar/._toppar_all36_na_rna_modified.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_nano_lig.str b/4idl_dihedral/toppar/._toppar_all36_nano_lig.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_nanolig_patch.str b/4idl_dihedral/toppar/._toppar_all36_nanolig_patch.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_polymer_solvent.str b/4idl_dihedral/toppar/._toppar_all36_polymer_solvent.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_prot_arg0.str b/4idl_dihedral/toppar/._toppar_all36_prot_arg0.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_prot_c36m_d_aminoacids.str b/4idl_dihedral/toppar/._toppar_all36_prot_c36m_d_aminoacids.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_prot_fluoro_alkanes.str b/4idl_dihedral/toppar/._toppar_all36_prot_fluoro_alkanes.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_prot_heme.str b/4idl_dihedral/toppar/._toppar_all36_prot_heme.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_prot_modify_res.str b/4idl_dihedral/toppar/._toppar_all36_prot_modify_res.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_prot_na_combined.str b/4idl_dihedral/toppar/._toppar_all36_prot_na_combined.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_prot_retinol.str b/4idl_dihedral/toppar/._toppar_all36_prot_retinol.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_synthetic_polymer.str b/4idl_dihedral/toppar/._toppar_all36_synthetic_polymer.str
diff --git a/4idl_dihedral/toppar/._toppar_all36_synthetic_polymer_patch.str b/4idl_dihedral/toppar/._toppar_all36_synthetic_polymer_patch.str
diff --git a/4idl_dihedral/toppar/._toppar_dum_noble_gases.str b/4idl_dihedral/toppar/._toppar_dum_noble_gases.str
diff --git a/4idl_dihedral/toppar/._toppar_ions_won.str b/4idl_dihedral/toppar/._toppar_ions_won.str
diff --git a/4idl_dihedral/toppar/._toppar_water_ions.str b/4idl_dihedral/toppar/._toppar_water_ions.str
diff --git a/4krn_all/toppar/._par_all36_carb.prm b/4krn_all/toppar/._par_all36_carb.prm
diff --git a/4krn_all/toppar/._par_all36_cgenff.prm b/4krn_all/toppar/._par_all36_cgenff.prm
diff --git a/4krn_all/toppar/._par_all36_lipid.prm b/4krn_all/toppar/._par_all36_lipid.prm
diff --git a/4krn_all/toppar/._par_all36_na.prm b/4krn_all/toppar/._par_all36_na.prm
diff --git a/4krn_all/toppar/._par_all36m_prot.prm b/4krn_all/toppar/._par_all36m_prot.prm
diff --git a/4krn_all/toppar/._par_interface.prm b/4krn_all/toppar/._par_interface.prm
diff --git a/4krn_all/toppar/._tip216.crd b/4krn_all/toppar/._tip216.crd
diff --git a/4krn_all/toppar/._top_all36_carb.rtf b/4krn_all/toppar/._top_all36_carb.rtf
diff --git a/4krn_all/toppar/._top_all36_cgenff.rtf b/4krn_all/toppar/._top_all36_cgenff.rtf
diff --git a/4krn_all/toppar/._top_all36_lipid.rtf b/4krn_all/toppar/._top_all36_lipid.rtf
diff --git a/4krn_all/toppar/._top_all36_na.rtf b/4krn_all/toppar/._top_all36_na.rtf
diff --git a/4krn_all/toppar/._top_all36_prot.rtf b/4krn_all/toppar/._top_all36_prot.rtf
diff --git a/4krn_all/toppar/._top_interface.rtf b/4krn_all/toppar/._top_interface.rtf
diff --git a/4krn_all/toppar/._toppar_all36_carb_glycolipid.str b/4krn_all/toppar/._toppar_all36_carb_glycolipid.str
diff --git a/4krn_all/toppar/._toppar_all36_carb_glycopeptide.str b/4krn_all/toppar/._toppar_all36_carb_glycopeptide.str
diff --git a/4krn_all/toppar/._toppar_all36_carb_imlab.str b/4krn_all/toppar/._toppar_all36_carb_imlab.str
diff --git a/4krn_all/toppar/._toppar_all36_label_fluorophore.str b/4krn_all/toppar/._toppar_all36_label_fluorophore.str
diff --git a/4krn_all/toppar/._toppar_all36_label_spin.str b/4krn_all/toppar/._toppar_all36_label_spin.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_archaeal.str b/4krn_all/toppar/._toppar_all36_lipid_archaeal.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_bacterial.str b/4krn_all/toppar/._toppar_all36_lipid_bacterial.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_cardiolipin.str b/4krn_all/toppar/._toppar_all36_lipid_cardiolipin.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_cholesterol.str b/4krn_all/toppar/._toppar_all36_lipid_cholesterol.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_dag.str b/4krn_all/toppar/._toppar_all36_lipid_dag.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_detergent.str b/4krn_all/toppar/._toppar_all36_lipid_detergent.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_ether.str b/4krn_all/toppar/._toppar_all36_lipid_ether.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_hmmm.str b/4krn_all/toppar/._toppar_all36_lipid_hmmm.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_inositol.str b/4krn_all/toppar/._toppar_all36_lipid_inositol.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_lps.str b/4krn_all/toppar/._toppar_all36_lipid_lps.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_miscellaneous.str b/4krn_all/toppar/._toppar_all36_lipid_miscellaneous.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_model.str b/4krn_all/toppar/._toppar_all36_lipid_model.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_prot.str b/4krn_all/toppar/._toppar_all36_lipid_prot.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_sphingo.str b/4krn_all/toppar/._toppar_all36_lipid_sphingo.str
diff --git a/4krn_all/toppar/._toppar_all36_lipid_yeast.str b/4krn_all/toppar/._toppar_all36_lipid_yeast.str
diff --git a/4krn_all/toppar/._toppar_all36_na_nad_ppi.str b/4krn_all/toppar/._toppar_all36_na_nad_ppi.str
diff --git a/4krn_all/toppar/._toppar_all36_na_rna_modified.str b/4krn_all/toppar/._toppar_all36_na_rna_modified.str
diff --git a/4krn_all/toppar/._toppar_all36_nano_lig.str b/4krn_all/toppar/._toppar_all36_nano_lig.str
diff --git a/4krn_all/toppar/._toppar_all36_nanolig_patch.str b/4krn_all/toppar/._toppar_all36_nanolig_patch.str
diff --git a/4krn_all/toppar/._toppar_all36_polymer_solvent.str b/4krn_all/toppar/._toppar_all36_polymer_solvent.str
diff --git a/4krn_all/toppar/._toppar_all36_prot_arg0.str b/4krn_all/toppar/._toppar_all36_prot_arg0.str
diff --git a/4krn_all/toppar/._toppar_all36_prot_c36m_d_aminoacids.str b/4krn_all/toppar/._toppar_all36_prot_c36m_d_aminoacids.str
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diff --git a/6dba_dihedral/toppar/._toppar_all36_lipid_miscellaneous.str b/6dba_dihedral/toppar/._toppar_all36_lipid_miscellaneous.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_lipid_model.str b/6dba_dihedral/toppar/._toppar_all36_lipid_model.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_lipid_mycobacterial.str b/6dba_dihedral/toppar/._toppar_all36_lipid_mycobacterial.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_lipid_prot.str b/6dba_dihedral/toppar/._toppar_all36_lipid_prot.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_lipid_sphingo.str b/6dba_dihedral/toppar/._toppar_all36_lipid_sphingo.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_lipid_tag.str b/6dba_dihedral/toppar/._toppar_all36_lipid_tag.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_lipid_yeast.str b/6dba_dihedral/toppar/._toppar_all36_lipid_yeast.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_moreions.str b/6dba_dihedral/toppar/._toppar_all36_moreions.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_na_nad_ppi.str b/6dba_dihedral/toppar/._toppar_all36_na_nad_ppi.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_na_rna_modified.str b/6dba_dihedral/toppar/._toppar_all36_na_rna_modified.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_nano_lig.str b/6dba_dihedral/toppar/._toppar_all36_nano_lig.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_nanolig_patch.str b/6dba_dihedral/toppar/._toppar_all36_nanolig_patch.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_polymer_solvent.str b/6dba_dihedral/toppar/._toppar_all36_polymer_solvent.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_prot_arg0.str b/6dba_dihedral/toppar/._toppar_all36_prot_arg0.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_prot_c36m_d_aminoacids.str b/6dba_dihedral/toppar/._toppar_all36_prot_c36m_d_aminoacids.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_prot_fluoro_alkanes.str b/6dba_dihedral/toppar/._toppar_all36_prot_fluoro_alkanes.str
diff --git a/6dba_dihedral/toppar/._toppar_all36_prot_heme.str b/6dba_dihedral/toppar/._toppar_all36_prot_heme.str