Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Adding more descriptions for using CHGNet pretrained models in Relaxations and Simulations using the M3GNet Universal Potential.ipynb #342

Merged
merged 40 commits into from
Sep 4, 2024

Conversation

kenko911
Copy link
Contributor

@kenko911 kenko911 commented Sep 4, 2024

Summary

Give more instructions for users to choose CHGNet pretrained models for performing atomistic simulations via ASE.

Checklist

  • Google format doc strings added. Check with ruff.
  • Type annotations included. Check with mypy.
  • Tests added for new features/fixes.
  • If applicable, new classes/functions/modules have duecredit @due.dcite decorators to reference relevant papers by DOI (example)

Tip: Install pre-commit hooks to auto-check types and linting before every commit:

pip install -U pre-commit
pre-commit install

kenko911 and others added 30 commits June 22, 2024 09:24
Signed-off-by: Tsz Wai Ko <[email protected]>
@kenko911 kenko911 requested a review from shyuep as a code owner September 4, 2024 23:12
Copy link
Contributor

coderabbitai bot commented Sep 4, 2024

Walkthrough

The notebook has been updated to use broader terminology regarding the M3GNet model, now referring to "universal potentials." It clarifies that M3GNet serves as a demonstration, allowing users to choose from various models. The calculator reference has changed from "M3GNetCalculator" to "PESCalculator," indicating a more generalized approach. Additionally, the Python environment version was updated from "3.10.14" to "3.10.9."

Changes

Files Change Summary
examples/Relaxations and Simulations using... Updated terminology to "universal potentials," clarified model selection, and changed calculator reference to "PESCalculator." Minor Python version change from "3.10.14" to "3.10.9."

Recent review details

Configuration used: .coderabbit.yaml
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 5c02794 and 984f9fa.

Files selected for processing (1)
  • examples/Relaxations and Simulations using the M3GNet Universal Potential.ipynb (5 hunks)
Additional comments not posted (5)
examples/Relaxations and Simulations using the M3GNet Universal Potential.ipynb (5)

10-10: LGTM!

The change in terminology from "M3GNet model" to "universal potentials" is approved as it indicates a broader applicability of the discussed methods.


45-46: LGTM!

The additional text clarifying that users can choose other available models is approved as it provides useful guidance.


55-57: LGTM!

The added comments suggesting loading different pretrained potentials and providing guidance on viewing available models are approved as they provide helpful information to users.


125-125: LGTM!

The change in the calculator name from "M3GNetCalculator" to "PESCalculator" is approved. This may imply a shift in the underlying implementation or a more generalized approach to potential energy surface calculations, but there is no indication that it affects the functionality or correctness of the code.


159-159: Verify the notebook's functionality with the updated Python version.

Please ensure that the notebook runs correctly with Python version 3.10.9, as the minor version change from 3.10.14 could potentially affect compatibility or available features.


Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

Share
Tips

Chat

There are 3 ways to chat with CodeRabbit:

  • Review comments: Directly reply to a review comment made by CodeRabbit. Example:
    • I pushed a fix in commit <commit_id>.
    • Generate unit testing code for this file.
    • Open a follow-up GitHub issue for this discussion.
  • Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
    • @coderabbitai generate unit testing code for this file.
    • @coderabbitai modularize this function.
  • PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
    • @coderabbitai generate interesting stats about this repository and render them as a table.
    • @coderabbitai show all the console.log statements in this repository.
    • @coderabbitai read src/utils.ts and generate unit testing code.
    • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
    • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

  • @coderabbitai pause to pause the reviews on a PR.
  • @coderabbitai resume to resume the paused reviews.
  • @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
  • @coderabbitai full review to do a full review from scratch and review all the files again.
  • @coderabbitai summary to regenerate the summary of the PR.
  • @coderabbitai resolve resolve all the CodeRabbit review comments.
  • @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
  • @coderabbitai help to get help.

Other keywords and placeholders

  • Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
  • Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
  • Add @coderabbitai anywhere in the PR title to generate the title automatically.

Documentation and Community

  • Visit our Documentation for detailed information on how to use CodeRabbit.
  • Join our Discord Community to get help, request features, and share feedback.
  • Follow us on X/Twitter for updates and announcements.

@kenko911 kenko911 merged commit ffeba21 into materialsvirtuallab:main Sep 4, 2024
6 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant