v0.1.0

MicrobeAgents v0.1.0

Closed issues:

• Example: run statistics (#10)
• Tumble detection (#11)
• Support StandardABM (#13)
• Port and update docs from Bactos.jl (#18)
• Celani shows chemotactic response if initialized from a non-zero concentration (#20)
• Error in the internal state update of BrownBerg (#21)
• Standardize fieldnames across different microbe types (#23)
• Add docstrings to extended Agents.jl functions (#26)
• Implement interface to CellListMap.jl for neighbor lists (#31)
• Docstring of distancevector is unclear (#33)
• Use the space interface from Agents.jl when creating an ABM (#37)
• Define a constant instead of hard-coded value for sensing noise (#38)

Merged pull requests:

• Xie chemotactic model (#1) (@mastrof)
• Use UnremovableABM (#2) (@mastrof)
• Microbe-sphere encounters (#3) (@mastrof)
• Pathfinder (#4) (@mastrof)
• Add spacing keyword to model constructor (#5) (@mastrof)
• Bugfix: MSD for non-cubic domains (#6) (@mastrof)
• Change affect! to unexposed _affect! (#7) (@mastrof)
• Chemotaxis - Celani (#8) (@mastrof)
• unexpose turnrate for Brumley and BrownBerg (#9) (@mastrof)
• Encounters-oldposition (#14) (@mastrof)
• Support both UnremovableABM and StandardABM (#17) (@mastrof)
• Tumble-detection (#19) (@mastrof)
• Bugfix: Error in the internal state update of BrownBerg (#22) (@mastrof)
• Standardize fieldnames (#25) (@mastrof)
• Initialize Celani at steady state (#27) (@mastrof)
• General docs update (#28) (@mastrof)
• Implement barebones interface to CellListMap.jl for neighbor lists (#32) (@mastrof)
• Use ContinuousSpace in ABM constructor (#40) (@mastrof)
• Fix docstrings of distance and distancevector (#41) (@mastrof)
• define CONV_NOISE constant (#43) (@mastrof)
• Chemotaxis (#47) (@mastrof)