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Automatic tool/resource-list update (elixir-europe#318)
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* Update tool/resource_list.yaml

* Update tool_and_resource_list.yml

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Co-authored-by: bedroesb <[email protected]>
Co-authored-by: Bert Droesbeke <[email protected]>
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3 people authored Jun 5, 2024
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Showing 1 changed file with 20 additions and 4 deletions.
24 changes: 20 additions & 4 deletions _data/tool_and_resource_list.yml
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registry:
biotools: covid-19-data-portal
fairsharing: f3b7a9
tess: Covid-19 data portal
tess: COVID-19 Data Portal
url: https://www.covid19dataportal.org/
- description: A platform allowing for browsing SARS-CoV-2 variability at the genome, amino acid, structural, and motif levels
id: crg-covid-19-viral-beacon
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registry:
fairsharing: acd824
url: https://elsst.cessda.eu/
- description: Galaxy tool wrapper of the ENA upload CLI to submit experimental data and respective metadata to the European Nucleotide Archive (ENA).
- description: Galaxy tool wrapper of the ENA upload CLI to submit experimental data and respective metadata to the European Nucleotide Archive (ENA).
id: ena-upload-tool
name: ENA upload Galaxy tool
url: https://toolshed.g2.bx.psu.edu/repository?repository_id=0db04aa13ef9d2f8
- description: Command line tool (CLI) allowing easy submission of data and respective metadata to the European Nucleotide Archive (ENA) using tabular files or an excel spreadsheet. The tool allows programatic submission of all ENA objects (study, sample, run and experiment) without the need of logging in to the Webin interface. This also includes client side validation using ENA checklists and releasing the ENA objects.
- description: Command line tool (CLI) allowing easy submission of data and respective metadata to the European Nucleotide Archive (ENA) using tabular files or an excel spreadsheet. The tool allows programatic submission of all ENA objects (study, sample, run and experiment) without the need of logging in to the Webin interface. This also includes client side validation using ENA checklists and releasing the ENA objects.
id: ena-upload-cli
name: ENA upload CLI
url: https://github.com/usegalaxy-eu/ena-upload-cli
- description: Galaxy wrapper to submit consensus sequences to ENA in an interactive way. The tool has the Webin-CLI script of ENA at its core and supports all sample checklists.
- description: Galaxy wrapper to submit consensus sequences to ENA in an interactive way. The tool has the Webin-CLI script of ENA at its core and supports all sample checklists.
id: ena-webin-cli
name: ENA Webin CLI
url: https://toolshed.g2.bx.psu.edu/repository?repository_id=dfa4f0fc31027b52
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- description: Python data visualization library that provides a high-level interface for drawing attractive and informative statistical graphics.
id: seaborn
name: seaborn
registry:
tess: seaborn
url: https://seaborn.pydata.org/
- description: Free software environment for statistical computing and graphics.
id: r
name: R
registry:
biotools: r
tess: R
url: https://www.r-project.org/
- description: Open source data analysis and manipulation tool, built on top of the Python programming language.
id: pandas
name: pandas
registry:
biotools: pandas
tess: pandas
url: https://pandas.pydata.org/
- description: Python library for scientific computing.
id: numpy
name: NumPy
registry:
biotools: numpy
tess: NumPy
url: https://numpy.org/
- description: Machine learning tools in Python
id: scikit-learn
name: Scikit-learn
registry:
biotools: scikit-learn
tess: Scikit-learn
url: https://scikit-learn.org/stable/
- description: Python library that uses machine learning to perform fuzzy matching, deduplication, and entity resolution quickly on structured data.
id: dedupe
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- description: Command line application to submit assemblies and transcriptomes to ENA.
id: webin-cli
name: Webin-CLI
registry:
tess: Webin-CLI
url: https://github.com/enasequence/webin-cli

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