Merge pull request #18 from marbl/dev_alt

v0.8.0 release. Merge from dev_alt branch
marbl · Mar 18, 2024 · ed190c7 · ed190c7
2 parents e1ba752 + 4b12e48
commit ed190c7
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diff --git a/LICENSE b/LICENSE
@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2022 MarBL
+Copyright (c) 2024 MarBL
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

diff --git a/README.md b/README.md
diff --git a/config/config.json b/config/config.json
@@ -1,6 +1,4 @@
 {
-    "static": true,
-    "alpha": 0.3,
     "identity": 90,
     "sparsity": 10,
     "palette": "OrRd_7",
@@ -14,8 +12,8 @@
         99,
         100
     ],
-    "output_dir": "Chr1_cen_plots",
-    "input": [
-        "./test/Chr1_cen.fa"
+    "output_dir": "chr1_cen_plots",
+    "fasta": [
+        "./sequences/chr1_cen.fa"
     ]
 }
diff --git a/docs/conf.py b/docs/conf.py
@@ -9,16 +9,16 @@
 project = 'ModDotPlot'
 copyright = '2024, Alex Sweeten, Michael Schatz, Adam Phillippy'
 author = 'Alex Sweeten, Michael Schatz, Adam Phillippy'
-release = '0.7.2'
+release = '0.8.0'
 
 # -- General configuration ---------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
 
-extensions = []
+extensions = ['sphinx_rtd_theme',]
 
 templates_path = ['_templates']
 exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
-
+html_theme = "sphinx_rtd_theme"
 
 
 # -- Options for HTML output -------------------------------------------------

diff --git a/images/Chr1:14000000-18000000_TRI.png b/images/Chr1:14000000-18000000_TRI.png
diff --git a/images/Chr1:14M-18M_FULL.png b/images/Chr1:14M-18M_FULL.png
diff --git a/images/chr1_screenshot.png b/images/chr1_screenshot.png
diff --git a/images/chrY_levels.png b/images/chrY_levels.png
diff --git a/images/comparative.png b/images/comparative.png
diff --git a/images/demo.gif b/images/demo.gif
diff --git a/images/logo.png b/images/logo.png
diff --git a/images/portforwarding.png b/images/portforwarding.png