Bioinformatics Scripts

Collection of scripts used for bioinformatics analyses.

extract_fasta_from_genbank

Python program that let's the user easily extract fasta sequences based on features.

Requires python3 and the following packages: biopython and fire.

Example usage:

extract_fasta.py --file A_lyrata.gbk --type gene --gene rbcL

Name		Name	Last commit message	Last commit date
Latest commit History 29 Commits
download_genbank_entries		download_genbank_entries
extract_fasta_from_genbank		extract_fasta_from_genbank
semiguided_assembly		semiguided_assembly
trim		trim
16S_Convolutional_Classifier.ipynb		16S_Convolutional_Classifier.ipynb
Computer_vision.ipynb		Computer_vision.ipynb
README.md		README.md
VariationalAutoencoder.ipynb		VariationalAutoencoder.ipynb
Variational_Autoencoder_16S.ipynb		Variational_Autoencoder_16S.ipynb
autoencoder.ipynb		autoencoder.ipynb
autoencoders_pytorch.ipynb		autoencoders_pytorch.ipynb
bash_template.sh		bash_template.sh