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  1. decoil-pre decoil-pre Public

    Reconstruct ecDNA from long-read data using Decoil tool

    Python 8

  2. ecDNA-simulate-validate-pipeline ecDNA-simulate-validate-pipeline Public

    Python

  3. decoil-viz decoil-viz Public

    Visualize circular ecDNA reconstructions using Decoil-viz

    Python 2

  4. ecDNA-sim ecDNA-sim Public

    Simulation of ecDNA sequence templates

    Python

  5. decoil-paper decoil-paper Public

    Forked from henssen-lab/decoil-paper

    Scripts and analysis for the Giurgiu et al. 2024. Genome Research. "Reconstructing extrachromosomal DNA structural heterogeneity from long-read sequencing data using Decoil".

    Jupyter Notebook

  6. pbsim2 pbsim2 Public

    Forked from yukiteruono/pbsim2

    PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores

    C++ 1