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Feat/macs3/fragmentfile #668

Merged
merged 13 commits into from
Oct 23, 2024
Merged

Feat/macs3/fragmentfile #668

merged 13 commits into from
Oct 23, 2024

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taoliu
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@taoliu taoliu commented Oct 22, 2024

  1. Add Parser.FragParser to read fragment files from scATAC-seq experiment.
  2. Add PETrackII classes to store the barcode and count data in fragment files, build pileup track, call peak, and extract subset of cells/barcodes.
  3. Rewrite all pyx files in pure python style.

@taoliu taoliu self-assigned this Oct 22, 2024
@taoliu taoliu merged commit bf8d0c8 into master Oct 23, 2024
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