These scripts generate realigned bam files for all ExAC variants. The bams can then be uploaded to the ExAC server where they can be shown on individual variant pages using igv.js. The goal is to allows users to see how well a given variant is supported by the underlying read data.
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Scripts used to generate the reassembled HaplotypeCaller -bamout bams that underly the read data visualizations which appear at the bottom of ExAC browser variant pages.
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macarthur-lab/exac-readviz
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Scripts used to generate the reassembled HaplotypeCaller -bamout bams that underly the read data visualizations which appear at the bottom of ExAC browser variant pages.
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