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add_ident

Last updated Oct 2, 2015

align_pair_seq

Last updated Oct 2, 2015

align_seq

Last updated Oct 2, 2015

analyze_assembly

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analyze_bed

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analyze_gc

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analyze_scores

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analyze_seq

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analyze_snp

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analyze_tags

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analyze_vals

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assemble_contigs

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assemble_pairs

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assemble_seq_idba

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assemble_seq_ray

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assemble_seq_velvet

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assemble_tag_contigs

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BGB_delete_track

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BGB_intersect

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BGB_list

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BGB_read_track

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BGB_upload

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bin_vals

Last updated Oct 2, 2015

BiopiecesGenomeBrowser

Last updated Oct 1, 2015

bioscript

Last updated Oct 2, 2015

biostat

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blast_seq

Last updated Oct 2, 2015

blast_seq_pair

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blat_seq

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bowtie2_seq

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bowtie_seq

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bwa_seq

Last updated Oct 2, 2015

calc_bit_scores

Last updated Oct 2, 2015

calc_density

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calc_fixedstep

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calc_N50

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classify_taxonomy

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clip_adaptor

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clip_seq

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complement_seq

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compute

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count_records

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count_vals

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create_blast_index

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create_bowtie2_index

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create_bowtie_index

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create_bwa_index

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create_fixedstep_index

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create_seq_index

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create_vmatch_index

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create_weight_matrix

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denoise_seq

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digest_seq

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duplicate_record

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embl_index

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extract_seq

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FAQ

Last updated Nov 17, 2015

find_adaptor

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find_barcodes

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find_gaps

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find_genes

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find_homopolymers

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find_orfs

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find_orphans

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find_pairs

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find_SNPs

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findsim_seq

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flip_tab

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fold_seq

Last updated Oct 2, 2015

format_genome

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get_embl_entry

Last updated Oct 2, 2015

get_fixedstep

Last updated Oct 2, 2015

get_genome_align

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get_genome_phastcons

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get_genome_seq

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get_seq

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grab

Last updated Oct 2, 2015

head_records

Last updated Oct 2, 2015

hmmer_seq

Last updated Oct 2, 2015

HowTo

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indel_seq

Last updated Oct 2, 2015

index_vals

Last updated Oct 2, 2015

Installation

Last updated May 29, 2020

intersect_records

Last updated Oct 2, 2015

Introduction

Last updated Oct 2, 2015

invert_align

Last updated Oct 2, 2015

join_seq

Last updated Oct 2, 2015

KissFormat

Last updated Oct 2, 2015

kmer_freq

Last updated Oct 2, 2015

length_seq

Last updated Oct 2, 2015

length_vals

Last updated Oct 2, 2015

list_biopieces

Last updated Oct 2, 2015

list_genomes

Last updated Oct 2, 2015

list_mysql_databases

Last updated Oct 2, 2015

lowercase_seq

Last updated Oct 2, 2015

mask_seq

Last updated Oct 2, 2015

match_seq

Last updated Oct 2, 2015

mate_pair_dist

Last updated Oct 2, 2015

max_vals

Last updated Oct 2, 2015

mean_scores

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mean_vals

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median_vals

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merge_pair_seq

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merge_records

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merge_vals

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min_vals

Last updated Oct 2, 2015

mutate_seq

Last updated Oct 2, 2015

oligo_freq

Last updated Oct 2, 2015

order_pairs

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patscan_seq

Last updated Oct 2, 2015

pcr_seq

Last updated Oct 2, 2015

plot_chrdist

Last updated Oct 2, 2015

plot_distribution

Last updated Oct 2, 2015

plot_histogram

Last updated Oct 2, 2015

plot_karyogram

Last updated Oct 2, 2015

plot_lendist

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plot_lines

Last updated Oct 2, 2015

plot_matches

Last updated Oct 2, 2015

plot_nucleotide_distribution

Last updated Oct 2, 2015

plot_phastcons_profiles

Last updated Oct 2, 2015

plot_scores

Last updated Oct 2, 2015

plot_seqlogo

Last updated Oct 2, 2015

print_wiki

Last updated Oct 2, 2015

progress_meter

Last updated Oct 2, 2015

PublicationsUsingBiopieces

Last updated Oct 1, 2015

random_records

Last updated Oct 2, 2015

read_2bit

Last updated Oct 2, 2015

read_454

Last updated Oct 2, 2015

read_ace

Last updated Oct 2, 2015

read_bed

Last updated Oct 2, 2015

read_blast_tab

Last updated Oct 2, 2015

read_embl

Last updated Oct 2, 2015

read_fasta

Last updated Oct 2, 2015

read_fastq

Last updated Oct 2, 2015

read_fixedstep

Last updated Oct 2, 2015

read_genbank

Last updated Oct 2, 2015

read_gff

Last updated Oct 2, 2015

read_kiss

Last updated Oct 2, 2015

read_mysql

Last updated Oct 2, 2015

read_pdb

Last updated Oct 2, 2015

read_psl

Last updated Oct 2, 2015

read_sam

Last updated Oct 2, 2015

read_sff

Last updated Oct 2, 2015

read_soft

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read_solid

Last updated Oct 2, 2015

read_stockholm

Last updated Oct 2, 2015

read_tab

Last updated Oct 2, 2015

read_ucsc_config

Last updated Oct 2, 2015

remove_adaptor

Last updated Oct 2, 2015

remove_indel_columns

Last updated Oct 2, 2015

remove_indels

Last updated Oct 2, 2015

remove_keys

Last updated Oct 2, 2015

remove_mysql_tables

Last updated Oct 2, 2015

remove_primers

Last updated Oct 2, 2015

remove_ucsc_tracks

Last updated Oct 2, 2015

rename_keys

Last updated Oct 2, 2015

replace_vals

Last updated Oct 2, 2015

rescan_seq

Last updated Oct 2, 2015

reverse_seq

Last updated Oct 2, 2015

scores_to_dec

Last updated Oct 2, 2015

shred_seq

Last updated Oct 2, 2015

shuffle_records

Last updated Oct 2, 2015

shuffle_seq

Last updated Oct 2, 2015

slice_align

Last updated Oct 2, 2015

soap_seq

Last updated Oct 2, 2015

sort_records

Last updated Oct 2, 2015

split_bed

Last updated Oct 2, 2015

split_pair_seq

Last updated Oct 2, 2015

split_seq

Last updated Oct 2, 2015

split_vals

Last updated Oct 2, 2015

substitute_vals

Last updated Oct 2, 2015

sum_vals

Last updated Oct 2, 2015

swapcase_seq

Last updated Oct 2, 2015

tile_seq

Last updated Oct 2, 2015

translate_seq

Last updated Oct 2, 2015

transliterate_seq

Last updated Oct 2, 2015

transliterate_vals

Last updated Oct 2, 2015

trim_seq

Last updated Oct 2, 2015

uchime_seq

Last updated Oct 1, 2015

uclust_seq

Last updated Oct 2, 2015

uniq_seq

Last updated Oct 2, 2015

uniq_vals

Last updated Oct 2, 2015

upload_to_ucsc

Last updated Oct 2, 2015

uppercase_seq

Last updated Oct 2, 2015

usearch_seq

Last updated Oct 2, 2015

vmatch_seq

Last updated Oct 2, 2015

Wiki

Last updated Nov 17, 2015

write_2bit

Last updated Oct 2, 2015

write_454

Last updated Oct 2, 2015

write_align

Last updated Oct 2, 2015

write_bed

Last updated Oct 2, 2015

write_blast

Last updated Oct 2, 2015

write_fasta

Last updated Oct 2, 2015

write_fasta_files

Last updated Oct 2, 2015

write_fastq

Last updated Oct 2, 2015

write_fastq_files

Last updated Oct 2, 2015

write_fixedstep

Last updated Oct 2, 2015

write_gff

Last updated Oct 2, 2015

write_kiss

Last updated Oct 2, 2015

write_mysql

Last updated Oct 2, 2015

write_psl

Last updated Oct 2, 2015

write_sam

Last updated Oct 2, 2015

write_solid

Last updated Oct 2, 2015

write_tab

Last updated Oct 2, 2015

write_ucsc_config

Last updated Oct 2, 2015

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