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Ci test #8

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merged 3 commits into from
Aug 20, 2024
Merged

Ci test #8

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bf7e3de
fix ci
DaRa42 Aug 16, 2024
5efed2a
fix ci
DaRa42 Aug 16, 2024
589c136
fix ci
DaRa42 Aug 16, 2024
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23 changes: 3 additions & 20 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -46,15 +46,15 @@ jobs:
run: |
conda init bash
source ~/.bashrc
mamba env remove --name ci_temp_env --yes || echo "Environment ci_temp_env does not exist"
conda create -n ci_temp_env --clone ci_env
wget https://raw.githubusercontent.com/insarlab/MiaplPy/main/conda-env.yml
conda-merge conda-env.yml tests/CI_docker/context/environment_sarvey.yml > env.yml
mamba update -n ci_temp_env -f env.yml
source activate ci_temp_env
mamba install json5
rm -rf tests/testdata
wget -nv -c -O testdata.zip https://seafile.projekt.uni-hannover.de/f/4b3be399dffa488e98db/?dl=1
unzip testdata.zip
mv testdata tests/
mamba list
make pytest
shell: bash

Expand Down Expand Up @@ -167,26 +167,9 @@ jobs:
with:
python-version: '3.x'

- name: Install Miniconda
run: |
if [ -d "$HOME/miniconda" ]; then
echo "Updating existing Miniconda installation."
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
bash miniconda.sh -b -u -p $HOME/miniconda
else
echo "Installing Miniconda."
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
bash miniconda.sh -b -p $HOME/miniconda
fi
echo "$HOME/miniconda/bin" >> $GITHUB_PATH
source $HOME/miniconda/bin/activate
conda init bash
source ~/.bashrc

- name: Install dependencies
run: |
source $HOME/miniconda/bin/activate
conda install mamba -n base -c conda-forge
mamba update -n base mamba conda
mamba info
mamba env remove --name sarvey_testinstall --yes || echo "Environment sarvey_testinstall does not exist"
Expand Down