Add video to readme

README.md

@@ -1,71 +1,50 @@
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 # Arboretum
 
 
+![](https://raw.githubusercontent.com/lowe-lab-ucl/arboretum/master/examples/arboretum.gif)
+*Automated cell tracking and lineage tree reconstruction*.
+
 ### Overview
 
 A dockable widget for [Napari](https://github.com/napari) for visualizing cell lineage trees.
 
-
 Features:
 + Lineage tree plot widget
 + Integration with [btrack](https://github.com/quantumjot/BayesianTracker)
 
-This project has changed considerably. The `Tracks` layer, originally developed for this plugin, is now an official layer type in napari. Read the napari documentation here:
- https://napari.org/api/stable/napari.layers.Tracks.html#napari.layers.Tracks
-
-
-To view the legacy version of this plugin, visit the legacy branch:
-https://github.com/quantumjot/arboretum/tree/v1-legacy
-
-[![LineageTree](https://raw.githubusercontent.com/quantumjot/arboretum/master/examples/arboretum.png)]()
-*Automated cell tracking and lineage tree reconstruction*.
-
 ---
 
+### Usage
 
+Once installed, Arboretum will be visible in the `Plugins > Add Dock Widget > napari-arboretum` menu in napari.  To visualize a lineage tree, click on one of the tracks in a napari `Tracks` layer.
 
 
 
-### Installation
-
-We recommend that you first install napari. Detailed instructions are here: https://github.com/napari/napari.
-
-```sh
-pip install 'napari[all]'
-```
-
-You can install arboretum directly from napari (using the `Plugins > Install/Uninstall Packages(s)...` menu) and searching for `napari-arboretum`.
+### Examples
 
-Alternatively, you can install directly from source:
+You can use the example script to display some sample tracking data in napari and load the arboretum tree viewer:
 
 ```sh
-git clone https://github.com/quantumjot/arboretum.git
-cd arboretum
-pip install -e .
+python ./examples/show_sample_data.py
 ```
 
-### Usage
-
-Once installed, Arboretum will be visible in the `Plugins > Add Dock Widget > napari-arboretum` menu in napari.  To visualize a lineage tree, click on one of the tracks in a napari `Tracks` layer.
-
-You can use *btrack* to generate tracks from your image data. See the example notebook here:
-https://github.com/quantumjot/BayesianTracker/blob/master/examples/segmentation_to_btrack_to_napari.ipynb
-
-
+Alternatively, you can use *btrack* to generate tracks from your image data. See the example notebook here:
+https://github.com/quantumjot/BayesianTracker/blob/master/examples
 
 ---
 
-#### TODO:
-+ [ ] Highlight cells in the viewer from the lineage tree view
-+ [ ] Visualize merges
-+ [ ] Color trees by properties
+### History
 
+This project has changed considerably. The `Tracks` layer, originally developed for this plugin, is now an official layer type in napari. Read the napari documentation here:
+ https://napari.org/api/stable/napari.layers.Tracks.html#napari.layers.Tracks
 
----
+
+To view the legacy version of this plugin, visit the legacy branch:
+https://github.com/quantumjot/arboretum/tree/v1-legacy