Update to description file with ORCIDs, first kalis paper, and bug re…

…ports URL.

DESCRIPTION

@@ -3,23 +3,27 @@ Type: Package
 Title: High Performance Li & Stephens Local Ancestry Inference
 Version: 2.0.0
 Authors@R: c(person("Louis", "Aslett", role = c("aut", "cre"),
-                    email = "[email protected]"),
+                    email = "[email protected]",
+                    comment = c(ORCID = "0000-0003-2211-233X")),
              person("Ryan", "Christ", role = "aut",
-                    email = "[email protected]"))
+                    email = "[email protected]",
+                    comment = c(ORCID = "0000-0002-2049-3389")))
 Author: Louis Aslett [aut, cre],
   Ryan Christ [aut]
 Maintainer: Louis Aslett <[email protected]>
-Description: kalis provides a high performance implementation of the Li &
-  Stephens model <https://www.ncbi.nlm.nih.gov/pubmed/14704198> for local
-  ancestry inference (local referring to a region of the genome). For a set of N
-  phased haplotypes, kalis computes the posterior marginal probability of each
-  haplotype copying every other haplotype by running N hidden Markov models in
-  parallel. This yields an N x N distance matrix that summarizes the recent
-  local ancestry at each variant of interest. The package provides functionality
-  for specifying a recombination map, site-specific mutation rates, and
-  differing prior copying probabilities for each recipient haplotype. Extensive
-  use is made of low level threading and CPU vector instructions.
+Description: kalis <doi:10.1186/s12859-024-05688-8> provides a high performance 
+  implementation of the Li & Stephens model <doi:10.1093/genetics/165.4.2213> 
+  for local ancestry inference (local referring to a region of the genome). For 
+  a set of N phased haplotypes, kalis computes the posterior marginal
+  probability of each haplotype copying every other haplotype by running N
+  hidden Markov models in parallel. This yields an N x N distance matrix that
+  summarizes the recent local ancestry at each variant of interest. The package
+  provides functionality for specifying a recombination map, site-specific
+  mutation rates, and differing prior copying probabilities for each recipient
+  haplotype. Extensive use is made of low level threading and CPU vector
+  instructions.
 License: GPL (>= 3)
+BugReports: https://github.com/louisaslett/kalis/issues
 URL: https://kalis.louisaslett.com/, https://github.com/louisaslett/kalis
 LazyData: TRUE
 Depends: R (>= 3.5.0)