Phylogram

A minimal package for plotting dendritic morphologies. Supports plotting anatomically and schematically (phylogram).

From the manuscript Functional architecture of intracellular oscillations in hippocampal dendrites by Zhenrui Liao*, Kevin C. Gonzalez*, Deborah M. Li, Catalina M. Yang, Donald Holder, Natalie E. McClain, Guofeng Zhang, Stephen W. Evans, Mariya Chavarha, Jane Simko, Christopher D. Makinson, Michael Z. Lin, Attila Losonczy & Adrian Negrean.

Installation

python setup.py install

or

python setup.py develop

or

pip -e PATH/TO/phylogram

Usage

See scripts

Input

For now only supports NEURON .hoc files. Eventually may add .swc file support as well

Output

Faithful reproduction of morphology

Schematic morphology