Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

feat(ena-deposition): Add metadata revision option #3180

Draft
wants to merge 7 commits into
base: main
Choose a base branch
from

Conversation

anna-parker
Copy link
Contributor

@anna-parker anna-parker commented Nov 5, 2024

resolves #3177

preview URL:

Summary

Screenshot

PR Checklist

  • All necessary documentation has been adapted.
  • The implemented feature is covered by an appropriate test.

@anna-parker anna-parker added the preview Triggers a deployment to argocd label Nov 5, 2024
@@ -50,7 +50,7 @@ def secure_ena_connection(config: Config):
config.test = True
logging.info("Submitting to ENA dev environment")
config.ena_submission_url = "https://wwwdev.ebi.ac.uk/ena/submit/drop-box/submit"
config.github_url = "https://raw.githubusercontent.com/pathoplexus/ena-submission/main/test/approved_ena_submission_list.json"
config.github_url = "https://raw.githubusercontent.com/pathoplexus/ena-submission/loculus_test/test/approved_ena_submission_list.json"
Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Revert before merge

Suggested change
config.github_url = "https://raw.githubusercontent.com/pathoplexus/ena-submission/loculus_test/test/approved_ena_submission_list.json"
config.github_url = "https://raw.githubusercontent.com/pathoplexus/ena-submission/main/test/approved_ena_submission_list.json"

@anna-parker anna-parker changed the title Add_revision_for_ena feat(ena-deposition): Add metadata revision option Nov 6, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
preview Triggers a deployment to argocd
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Automate revising sequence metadata in samples submitted to ENA
1 participant