update cor_and_plot

lixiang117423 · Jan 2, 2025 · aee9e1b · aee9e1b
1 parent c70355e
commit aee9e1b
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Showing 3 changed files with 3 additions and 70 deletions.
diff --git a/NAMESPACE b/NAMESPACE
diff --git a/R/cor_and_plot.R b/R/cor_and_plot.R
@@ -35,7 +35,7 @@ cor_and_plot <- function(data.1, data.2 = NULL, method = "pearson", cor = 0.6, p
       tidyr::pivot_longer(cols = 2:ncol(.), names_to = "to", values_to = "pvalue") -> df.pvalue
 
     dplyr::left_join(df.cor, df.pvalue) %>%
-      dplyr::filter(pvalue <= {{ pvalue }}, cor >= {{ cor }}, from != to) -> result.cor
+      dplyr::filter(pvalue <= {{ pvalue }}, abs(cor) >= {{ cor }}, from != to) -> result.cor
   } else {
     WGCNA::corAndPvalue(x = {{ data.1 }}, y = {{ data.2 }}, method = {{ method }}) -> cor.res
 
@@ -50,7 +50,7 @@ cor_and_plot <- function(data.1, data.2 = NULL, method = "pearson", cor = 0.6, p
       tidyr::pivot_longer(cols = 2:ncol(.), names_to = "to", values_to = "pvalue") -> df.pvalue
 
     dplyr::left_join(df.cor, df.pvalue) %>%
-      dplyr::filter(pvalue <= {{ pvalue }}, cor >= {{ cor }}, from != to) -> result.cor
+      dplyr::filter(pvalue <= {{ pvalue }}, abs(cor) >= {{ cor }}, from != to) -> result.cor
   }
 
   # return

diff --git a/vignettes/cor_and_plot.Rmd b/vignettes/cor_and_plot.Rmd
@@ -14,6 +14,6 @@ knitr::opts_chunk$set(
 )
 ```
 
-```{r, eval = FALSE}
+```{r setup}
 library(biohelpers)
 ```