Update readme

README.md

@@ -166,6 +166,12 @@ The last step of generating simple report can be done with the command:
 	perl trust-simplerep.pl trust_cdr3.out > trust_report.out
 
 If you are interested in a subset of chains, you can "grep" those from trust_cdr3.out and run trust-simplerep.pl on the subset.
+
+* #### Annotation only
+
+You can use the "annotator" from TRUST4 to annotate the V,D,J,C genes and CDRs for any given sequences, just like using IgBLAST or IMGT/VQuest. To obtain the annotation in AIRR format for human sequences with eight threads, you can use the command
+
+  ./annotator -f human_IMGT+C.fa -a input.fa --fasta -t 8 --needReveserComplement --noImpute --outputFormat 1 > annotation.tsv 
 
 ### Example
 

run-trust4

@@ -7,7 +7,7 @@ use Cwd 'cwd' ;
 use Cwd 'abs_path' ;
 use File::Basename ;
 
-die "TRUST4 v1.0.10.1-r454 usage: ./run-trust4 [OPTIONS]:\n".
+die "TRUST4 v1.0.11-r458 usage: ./run-trust4 [OPTIONS]:\n".
     "Required:\n".
     #"\t[Input]:\n".
     "\t-b STRING: path to bam file\n".