Fix a serious bug in wrapper for not generating cdr3 report file when…

… input barcode file
liulab-dfci · Jul 27, 2021 · 59875ea · 59875ea
1 parent f7b3299
commit 59875ea
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/run-trust4 b/run-trust4
@@ -400,6 +400,10 @@ if ( $stage <= 2 )
 	{
 		$annotatorArgs .= " -r ${prefix}_assembled_reads.fa" ;
 	}
+	else
+	{
+		$annotatorArgs .= " --outputCDR3File" ;
+	}
 
 	if ( $vdjcRef eq "" )
 	{