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correcting the URL
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linsalrob committed Nov 5, 2024
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Showing 1 changed file with 8 additions and 8 deletions.
16 changes: 8 additions & 8 deletions Workshops/COMBINE_WA_2024.md
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Expand Up @@ -252,14 +252,14 @@ For this patient, we sequenced several different samples. You can click on the l

Sample | R1 or R2 | Number of sequences | Total length | Shortest | Longest | N50 | N75 | auN
-- | -- | -- | -- | -- | -- | -- | -- | --
[../Datasets/CF/788707_20171213_S_R1.fastq.gz](788707_20171213_S) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[../Datasets/CF/788707_20171213_S_R2.fastq.gz](788707_20171213_S) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[../Datasets/CF/788707_20180129_S_R1.fastq.gz](788707_20180129_S) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[../Datasets/CF/788707_20180129_S_R2.fastq.gz](788707_20180129_S) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[../Datasets/CF/788707_20180313_S_R2.fastq.gz](788707_20180313_S) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[../Datasets/CF/788707_20180313_S_R1.fastq.gz](788707_20180313_S) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[../Datasets/CF/788707_20181126_S_R1.fastq.gz](788707_20181126_S) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[../Datasets/CF/788707_20181126_S_R2.fastq.gz](788707_20181126_S) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[788707_20171213_S](../Datasets/CF/788707_20171213_S_R1.fastq.gz) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[788707_20171213_S](../Datasets/CF/788707_20171213_S_R2.fastq.gz) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[788707_20180129_S](../Datasets/CF/788707_20180129_S_R1.fastq.gz) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[788707_20180129_S](../Datasets/CF/788707_20180129_S_R2.fastq.gz) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[788707_20180313_S](../Datasets/CF/788707_20180313_S_R2.fastq.gz) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[788707_20180313_S](../Datasets/CF/788707_20180313_S_R1.fastq.gz) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[788707_20181126_S](../Datasets/CF/788707_20181126_S_R1.fastq.gz) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300
[788707_20181126_S](../Datasets/CF/788707_20181126_S_R2.fastq.gz) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300

Download each of the datasets that we don't already have and put them in the `reads` directory. We are going to map all these reads to the contigs we have just created.

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