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munging timeline
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linsalrob committed Nov 9, 2024
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17 changes: 8 additions & 9 deletions Workshops/COMBINE_WA_2024.md
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Expand Up @@ -21,24 +21,23 @@ Time | Topic
1030-1100 | Morning coffee
1100-1200 | Downloading data and filtering human genomes using minimap2
1200-1300 | Lunch
1300-1330 | Introduction to methods for identifying species GTDB, SingleM
1330-1430 | Hands-on with SingleM
1430-1500 | Introduction to binning
1300-1330 | Introduction to methods for identifying species focus, SingleM
1330-1500 | Hands-on with SingleM and focus
1500-1530 | Afternoon tea
1530-1600 | Microbial binning
1600-1700 | Hands on with binning
1530-1600 | Introduction to methods for functional analysis
1600-1700 | SUPER-FOCUS hands-on


## Day 2: Tuesday November 12<sup>th</sup>

Time | Topic
-- | --
0900-0930 | Recap of Day 1
0930-1000 | Introduction to methods for functional analysis
1000-1030 | SUPER-FOCUS hands-on
0930-1000 | Introduction to binning
1000-1030 | Megahit assembly
1030-1100 | Morning coffee
1100-1200 | Viral identification using Hecatomb
1200-1230 | Hecatomb hands-on
1100-1200 | Binning by hand
1200-1230 | Viral identification using Hecatomb
1230-1330 | Lunch
1400-1500 | Hands-on data visualisation
1500-1530 | Afternoon tea
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