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3.x #145

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merged 6 commits into from
Jan 5, 2024
Merged

3.x #145

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add yml file to install environment for dbcan-protocol
linnabrown committed Jan 5, 2024
commit d1181ffd4635f0511dbba3e7c52d3e732ef3bdf8
31 changes: 31 additions & 0 deletions dbcan.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,31 @@
name: CAZyme_annotation
channels:
- conda-forge
- bioconda
- defaults
- agBiome
dependencies:
- python=3.9
- prokka
- megahit
- trim-galore
- blast
- bwa
- diamond
- hmmer
- samtools
- bedtools
- seqkit
- kraken2
- seqtk
- flye
- minimap2
- mmseqs2
- dbcan
- numpy
- pandas
- scipy
- matplotlib
- openpyxl
- biopython
- bbtools