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add yml file to install environment for dbcan-protocol
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linnabrown committed Jan 5, 2024
1 parent 1ab48c8 commit d1181ff
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31 changes: 31 additions & 0 deletions dbcan.yml
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name: CAZyme_annotation
channels:
- conda-forge
- bioconda
- defaults
- agBiome
dependencies:
- python=3.9
- prokka
- megahit
- trim-galore
- blast
- bwa
- diamond
- hmmer
- samtools
- bedtools
- seqkit
- kraken2
- seqtk
- flye
- minimap2
- mmseqs2
- dbcan
- numpy
- pandas
- scipy
- matplotlib
- openpyxl
- biopython
- bbtools

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