Train script #270

	# This workflow will install Python dependencies, run tests and report code coverage with a variety of Python versions
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: Unit test and code coverage

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	jobs:
	build:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- uses: actions/checkout@v3
	- uses: mamba-org/setup-micromamba@v1
	with:
	create-args: >-
	python=3.9.15
	environment-file: ci-environment.yml
	- name: Install dependencies
	run: \|
	sudo apt-get update
	python -m pip install --upgrade pip
	pip install .
	pip install 'git+https://github.com/facebookresearch/detectron2.git@80307d2d5e06f06a8a677cc2653f23a4c56402ac'
	pip install 'git+https://github.com/pmelchior/scarlet.git'
	pip install .[dev]
	- name: Run unit tests with pytest
	run: \|
	python -m pytest tests --cov=deepdisc --cov-report=xml
	- name: Upload coverage report to codecov
	uses: codecov/codecov-action@v3

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