Merge pull request #39 from libAtoms/pyproject_toml #154
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| name: Build and test | |
| # on all push actions AND can be triggered manually as well | |
| on: | |
| push: | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install dependencies and expyre | |
| run: | | |
| pip install flake8 pytest pytest-cov | |
| - name: Install and configure slurm and ExPyRe | |
| run: | | |
| sudo apt-get install -u slurm-wlm mailutils | |
| echo "SLURM apt-get done, doing local configuration" | |
| host_s=$( hostname -s ) | |
| if [ -f /etc/slurm/slurm.conf ]; then sudo mv /etc/slurm/slurm.conf /etc/slurm/slurm.conf.orig; fi | |
| sudo bash -c 'gzip -cd /usr/share/doc/slurmd/examples/slurm.conf.simple.gz > /etc/slurm/slurm.conf' | |
| # sudo sed -E -i -e "s/^\s*ClusterName\s*=.*/ClusterName=github_expyre_test/" /etc/slurm/slurm.conf | |
| sudo bash -c 'sed -E -i -e "s/^\s*SlurmctldHost\s*=.*/SlurmctldHost=_HOST_/" /etc/slurm/slurm.conf' | |
| # sudo sed -E -i -e "s/^\s*DefaultStorageHost\s*=.*/DefaultStorageHost=none" /etc/slurm/slurm.conf | |
| sudo bash -c 'echo "NodeName=_HOST_ CPUs=2 Weight=1 Sockets=1 CoresPerSocket=2 ThreadsPerCore=1 RealMemory=1000" >> /etc/slurm/slurm.conf' | |
| sudo bash -c 'echo "PartitionName=standard Default=YES AllocNodes=_HOST_ Nodes=ALL State=UP" >> /etc/slurm/slurm.conf' | |
| sudo sed -i -e "s/_HOST_/$host_s/g" /etc/slurm/slurm.conf | |
| sudo mkdir -p /var/log/slurm | |
| sudo mkdir -p /var/spool/slurmd | |
| sudo service slurmd start | |
| sudo service slurmctld start | |
| sleep 5 | |
| echo "sinfo -s --long" | |
| sinfo -s --long | |
| mkdir $HOME/.expyre | |
| cp .github/workflows_assets/config.json $HOME/.expyre | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 expyre/ --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. | |
| flake8 expyre/ --count --exit-zero --max-complexity=10 --max-line-length=120 --statistics | |
| # - name: Test with pytest - no coverage | |
| # run: | | |
| # # env EXPYRE_PYTEST_SYSTEMS=github EXPYRE_PYTEST_MAX_NUM_NODES=1 pytest -v --clean -rxXs --basetemp $HOME/pytest | |
| # env EXPYRE_PYTEST_SYSTEMS=github EXPYRE_PYTEST_MAX_NUM_NODES=1 pytest -v --clean -rxXs --basetemp $HOME/pytest | |
| - name: Test with pytest - coverage | |
| run: | | |
| env EXPYRE_PYTEST_QUEUED_JOB_RESOURCES=$PWD/.github/workflows_assets/EXPYRE_PYTEST_QUEUED_JOB_RESOURCES.json EXPYRE_PYTEST_SYSTEMS=github EXPYRE_PYTEST_MAX_NUM_NODES=1 pytest -v --cov=expyre --cov-report term --cov-report html --cov-config=tests/.coveragerc --cov-report term-missing --cov-report term:skip-covered --clean -rxXs --basetemp $HOME/pytest | |
| # - name: Upload Coverage Data | |
| # uses: actions/upload-artifact@v2 | |
| # with: | |
| # name: coverage-html | |
| # path: coverage-html/ | |
| # retention-days: 7 | |
| docs: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| # if: github.ref == 'refs/heads/public' | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Build documentation | |
| run: | | |
| pip install sphinx sphinx-book-theme docutils==0.16 sphinx-click | |
| pip install --upgrade jinja2 | |
| cd docs | |
| make html | |
| - name: Deploy documentation | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: docs/build/html | |