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@deric
deric committed Jun 9, 2015
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14 changes: 14 additions & 0 deletions .gitignore
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*.class

# Package Files #
*.jar
*.war
*.ear
*~
.classpath
.project
.settings/
target/
logs/
/nbproject/private/

5 changes: 5 additions & 0 deletions README.md
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# Clustering benchmarks

in order to run benchmark compile dependencies into a single JAR file:

mvn assembly:assembly
3 changes: 3 additions & 0 deletions evolve-sc
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#!/bin/bash
ARGS="evolve-sc --test --generations 20 --population 50 $@"
`./run $ARGS`
21 changes: 21 additions & 0 deletions nb-configuration.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project-shared-configuration>
<!--
This file contains additional configuration written by modules in the NetBeans IDE.
The configuration is intended to be shared among all the users of project and
therefore it is assumed to be part of version control checkout.
Without this configuration present, some functionality in the IDE may be limited or fail altogether.
-->
<spellchecker-wordlist xmlns="http://www.netbeans.org/ns/spellchecker-wordlist/1">
<word>unsupervised</word>
</spellchecker-wordlist>
<properties xmlns="http://www.netbeans.org/ns/maven-properties-data/1">
<!--
Properties that influence various parts of the IDE, especially code formatting and the like.
You can copy and paste the single properties, into the pom.xml file and the IDE will pick them up.
That way multiple projects can share the same settings (useful for formatting rules for example).
Any value defined here will override the pom.xml file value but is only applicable to the current project.
-->
<netbeans.hint.licensePath>${project.basedir}/../../license.txt</netbeans.hint.licensePath>
</properties>
</project-shared-configuration>
204 changes: 204 additions & 0 deletions pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<artifactId>clueminer-parent</artifactId>
<groupId>org.clueminer</groupId>
<version>0.1-SNAPSHOT</version>
<relativePath>../..</relativePath>
</parent>

<groupId>org.clueminer</groupId>
<artifactId>clustering-benchmark</artifactId>
<version>0.1-SNAPSHOT</version>
<packaging>nbm</packaging>

<name>clustering-benchmark</name>

<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>

<repositories>
<!--
Repository hosting NetBeans modules, especially APIs.
Versions are based on IDE releases, e.g.: RELEASE691
To create your own repository, use: nbm:populate-repository
-->
<repository>
<id>netbeans</id>
<name>NetBeans</name>
<url>http://bits.netbeans.org/maven2/</url>
<snapshots>
<enabled>false</enabled>
</snapshots>
</repository>
</repositories>

<dependencies>
<dependency>
<groupId>org.netbeans.api</groupId>
<artifactId>org-netbeans-api-annotations-common</artifactId>
<version>RELEASE80</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>dataset-api</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>clustering-impl</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>clustering-api</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>dataset-impl</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>dataset-io</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>fixtures</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>dataset-benchmark</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.netbeans.api</groupId>
<artifactId>org-openide-util-lookup</artifactId>
<version>RELEASE80</version>
</dependency>
<dependency>
<groupId>org.netbeans.api</groupId>
<artifactId>org-openide-util</artifactId>
<version>RELEASE80</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>utils</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>clustering-evolution</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>clustering-eval</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>clustering-dist</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>fixtures-clustering</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.10</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.beust</groupId>
<artifactId>jcommander</artifactId>
<version>1.32</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>guava</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>fastutil</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>evolution-api</artifactId>
<version>${project.version}</version>
</dependency>
</dependencies>

<build>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>nbm-maven-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<publicPackages>
<publicPackage>org.clueminer.clustering.benchmark</publicPackage>
</publicPackages>
</configuration>
</plugin>

<plugin>
<!-- NetBeans 6.9+ requires JDK 6 -->
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>${maven.compiler}</version>
<configuration>
<source>1.7</source>
<target>1.7</target>
<archive>
<manifest>
<mainClass>org.clueminer.clustering.benchmark.Main</mainClass>
<packageName>org.clueminer.clustering.benchmark</packageName>
<addClasspath>true</addClasspath>
</manifest>
</archive>
</configuration>
</plugin>

<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>2.4</version>
<configuration>
<!-- to have the jar plugin pickup the nbm generated manifest -->
<useDefaultManifestFile>true</useDefaultManifestFile>
<archive>
<manifest>
<mainClass>org.clueminer.clustering.benchmark.Main</mainClass>
<packageName>org.clueminer.clustering.benchmark</packageName>
<addClasspath>true</addClasspath>
</manifest>
</archive>
</configuration>
</plugin>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
<archive>
<manifest>
<mainClass>org.clueminer.clustering.benchmark.Main</mainClass>
</manifest>
</archive>
</configuration>
</plugin>
</plugins>
</build>
</project>
9 changes: 9 additions & 0 deletions run
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#!/bin/bash
ARGS="$@"
MAIN="org.clueminer.clustering.benchmark.Main"
jarfile="$(ls -t target/*jar-with-dependencies.jar | head -1)"
if [[ -f "$jarfile" ]]; then
java -jar $jarfile $ARGS
else
mvn "-Dexec.args=-classpath %classpath $MAIN $ARGS" -Dexec.executable=java -Dexec.classpathScope=runtime org.codehaus.mojo:exec-maven-plugin:1.2.1:exec
fi
24 changes: 24 additions & 0 deletions src/main/java/org/clueminer/clustering/benchmark/AbsParams.java
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package org.clueminer.clustering.benchmark;

import com.beust.jcommander.Parameter;
import java.io.File;
import org.clueminer.utils.FileUtils;
import org.openide.util.NbBundle;

/**
*
* @author Tomas Barton
*/
public class AbsParams {

@Parameter(names = "--dir", description = "directory for results", required = false)
public String home = System.getProperty("user.home") + File.separatorChar
+ NbBundle.getMessage(FileUtils.class, "FOLDER_Home");

@Parameter(names = "--repeat", description = "number of repetitions of each experiment")
public int repeat = 5;

@Parameter(names = "--log", description = "java log level")
public String log = "INFO";

}
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