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update notebooks for 2024 course #33

update notebooks for 2024 course

update notebooks for 2024 course #33

name: SENSE_convml-tt
on: [push]
jobs:
test:
name: Test python ${{ matrix.python-version }} on ${{ matrix.os }}
defaults:
# for micromamba
run:
shell: bash -l {0}
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, windows-latest]
# not testing on macos since the notebook execution times out for nbval
python-version: [3.8]
steps:
- uses: actions/checkout@v2
# - name: Setup tmate session
# uses: mxschmitt/action-tmate@v2
- uses: conda-incubator/setup-miniconda@v2
with:
channels: conda-forge
channel-priority: strict
mamba-version: "*"
activate-environment: convml_tt
auto-update-conda: false
python-version: ${{ matrix.python-version }}
- name: Set up conda environment
run: |
mamba env update --file binder/environment.yml
- run: conda --version
- run: which python
- name: Install test packages
shell: bash -l {0}
run: |
python -m pip install pytest nbval
- name: which python
shell: bash -l {0}
run: |
which python
- name: git info
run: |
git log --name-only -1 | cat -
- name: Download test data
shell: bash -l {0}
run: |
cd notebooks
mkdir data
cd data
curl https://homepages.see.leeds.ac.uk/~earlcd/ml-datasets/Nx256_s200000.0_N500study_N2000train.tgz --output Nx256_s200000.0_N500study_N2000train.tgz -k
tar zxvf Nx256_s200000.0_N500study_N2000train.tgz
curl https://homepages.see.leeds.ac.uk/~earlcd/ml-datasets/fixednorm-stage-2.tgz --output fixednorm-stage-2.tgz -k
tar zxvf fixednorm-stage-2.tgz
- name: Test with pytest
shell: bash -l {0}
run: |
pytest --nbval-lax