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[WIP] Large dataset test branch #316

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[WIP] Large dataset test branch #316

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0c7f847
update downstream rnaseq for large test data
esnaultc Sep 24, 2020
e5999d4
cleanup
esnaultc Sep 24, 2020
4cec15d
configs for large test dataset
esnaultc Sep 24, 2020
39960a6
update ci for large test dataset
esnaultc Sep 24, 2020
7d09db2
add chipseq downstream diffbind
esnaultc Sep 24, 2020
90cf34a
update gitignore
esnaultc Sep 24, 2020
ec36c5e
add back PE test samples
esnaultc Sep 25, 2020
6d46430
add star
esnaultc Sep 25, 2020
714b2cd
update requirements for diffbind
esnaultc Sep 25, 2020
03174bb
update test configs with large datasets
esnaultc Sep 25, 2020
25e382f
add merged bigwigs for testing
esnaultc Sep 25, 2020
0073954
add diffbind in tests
esnaultc Sep 25, 2020
b434ee5
simplify contrasts
esnaultc Sep 25, 2020
622d98d
use test reference for rnaseq_pe
esnaultc Sep 25, 2020
73a98da
update for human large dataset
esnaultc Sep 25, 2020
cd2bb06
adjust ressources
esnaultc Sep 25, 2020
71a1e40
scale back ressources
esnaultc Sep 25, 2020
1106a82
remove JQ1 samples to preserve RAM
esnaultc Sep 25, 2020
555a789
Merge branch 'master' into large-dataset-test
daler Dec 7, 2020
660e963
fix config syntax
daler Dec 7, 2020
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adjust ressources
@esnaultc
esnaultc committed Sep 25, 2020
commit cd2bb06a4058303a2fc21a91bd96b7fca6506f0f
2 changes: 1 addition & 1 deletion .circleci/config.yml
View file
Original file line number Diff line number Diff line change
@@ -354,7 +354,7 @@ jobs:

rnaseq:
<<: *defaults
resource_class: large
resource_class: medium+
steps:
- checkout
- *restore_cache