🚚 Rename PlateWell to Well

lnschema_lamin1/__init__.py

@@ -15,7 +15,7 @@
    Techsample
    Treatment
    TreatmentTarget
-   PlateWell
+   Well
 
 """
 
@@ -30,8 +30,8 @@
         Biosample,
         Experiment,
         ExperimentType,
-        PlateWell,
         Techsample,
         Treatment,
         TreatmentTarget,
+        Well,
     )

lnschema_lamin1/migrations/0010_rename_platewell_well.py

@@ -0,0 +1,61 @@
+# Generated by Django 4.2.1 on 2023-09-18 15:46
+
+import lnschema_core.ids
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+    dependencies = [
+        ("lnschema_core", "0019_dataset_reference_dataset_reference_type_and_more"),
+        ("lnschema_lamin1", "0009_alter_platewell_id"),
+    ]
+
+    operations = [
+        migrations.RenameModel(
+            old_name="PlateWell",
+            new_name="Well",
+        ),
+        migrations.AlterUniqueTogether(
+            name="well",
+            unique_together={("row", "column")},
+        ),
+        migrations.AddField(
+            model_name="well",
+            name="name",
+            field=models.CharField(db_index=True, default=None, max_length=32, null=True, unique=True),
+        ),
+        migrations.RemoveField(
+            model_name="well",
+            name="plate",
+        ),
+        migrations.AlterField(
+            model_name="well",
+            name="id",
+            field=models.CharField(
+                default=lnschema_core.ids.base62_4,
+                max_length=4,
+                primary_key=True,
+                serialize=False,
+            ),
+        ),
+        migrations.AddField(
+            model_name="biosample",
+            name="datasets",
+            field=models.ManyToManyField(related_name="biosamples", to="lnschema_core.dataset"),
+        ),
+        migrations.AddField(
+            model_name="experiment",
+            name="datasets",
+            field=models.ManyToManyField(related_name="experiments", to="lnschema_core.dataset"),
+        ),
+        migrations.AddField(
+            model_name="treatment",
+            name="datasets",
+            field=models.ManyToManyField(related_name="treatments", to="lnschema_core.dataset"),
+        ),
+        migrations.AddField(
+            model_name="well",
+            name="datasets",
+            field=models.ManyToManyField(related_name="wells", to="lnschema_core.dataset"),
+        ),
+    ]

lnschema_lamin1/models.py

@@ -4,7 +4,7 @@
 from django.db.models import PROTECT
 from lnschema_bionty.models import CellLine, CellType, Disease, Species, Tissue
 from lnschema_core import ids
-from lnschema_core.models import File, Registry, User
+from lnschema_core.models import Dataset, File, Registry, User
 from lnschema_core.types import ChoicesMixin
 from lnschema_core.users import current_user_id
 
@@ -55,7 +55,9 @@ class Experiment(Registry):
     experiment_type = models.ForeignKey(ExperimentType, PROTECT, null=True, related_name="experiments")
     """Type of the experiment."""
     files = models.ManyToManyField(File, related_name="experiments")
-    """Date on which the experiment is performed."""
+    """Files linked to the experiment."""
+    datasets = models.ManyToManyField(Dataset, related_name="experiments")
+    """Datasets linked to the experiment."""
     created_at = models.DateTimeField(auto_now_add=True, db_index=True)
     """Time of creation of record."""
     updated_at = models.DateTimeField(auto_now=True, db_index=True)
@@ -64,17 +66,18 @@ class Experiment(Registry):
     """Creator of record, a :class:`~lamindb.User`."""
 
 
-class PlateWell(Registry):
+class Well(Registry):
     """Wells in a experimental plate."""
 
-    id = models.CharField(max_length=8, default=ids.base62_8, primary_key=True)
-    plate = models.IntegerField()
+    id = models.CharField(max_length=4, default=ids.base62_4, primary_key=True)
+    name = models.CharField(max_length=32, default=None, null=True, unique=True, db_index=True)
     row = models.CharField(max_length=4, default=None)
     column = models.IntegerField()
     files = models.ManyToManyField(File, related_name="wells")
+    datasets = models.ManyToManyField(Dataset, related_name="wells")
 
     class Meta:
-        unique_together = (("plate", "row", "column"),)
+        unique_together = (("row", "column"),)
 
 
 class TreatmentTarget(Registry):
@@ -128,6 +131,8 @@ class Treatment(Registry):
     """Pubchem ID of the chemical treatment."""
     files = models.ManyToManyField(File, related_name="treatments")
     """Files linked to the treatment."""
+    datasets = models.ManyToManyField(Dataset, related_name="treatments")
+    """Datasets linked to the treatment."""
     created_at = models.DateTimeField(auto_now_add=True, db_index=True)
     """Time of creation of record."""
     updated_at = models.DateTimeField(auto_now=True, db_index=True)
@@ -158,6 +163,8 @@ class Biosample(Registry):
     """Diseases linked to the biosample."""
     files = models.ManyToManyField(File, related_name="biosamples")
     """Files linked to the biosample."""
+    datasets = models.ManyToManyField(Dataset, related_name="biosamples")
+    """Datasets linked to the biosample."""
     created_at = models.DateTimeField(auto_now_add=True, db_index=True)
     """Time of creation of record."""
     updated_at = models.DateTimeField(auto_now=True, db_index=True)