Release 0.77.4

See #2399

Full Changelog: 0.77.3...0.77.4

Release 1.0.5

See https://docs.lamin.ai/changelog/2025#db-1-0-5

What's Changed

• 👷 Adjust coverage calculation if a job isn't run and prettify build.yml by @falexwolf in #2361
• ✨ Support Python 3.13 by @Zethson in #2366
• 🐛 Fix init (when the instance exists) and connect with migration for cloud sqlite instances by @Koncopd in #2373
• ✅ Update and test replace for folder artifacts by @Koncopd in #2374
• 🚸 No longer throw a NotebookNotSaved error in ln.finish() but wait for the user or gracefully exit by @falexwolf in #2375
• 🚸 Enable users to re-run ln.finish() and better resolve multiple users attempting to edit the same notebook draft by @falexwolf in #2376
• 🐛 Further fixes and tests for Artifact.replace by @Koncopd in #2377
• 🚸 In ln.finish() enhance experience of waiting for editor flush (attempt 2) by @falexwolf in #2380
• ✅ Test folder replacement correctly by @Koncopd in #2381

Full Changelog: 1.0.4...1.0.5

Release 1.0.4

See https://docs.lamin.ai/changelog/2025#db-1-0-4

What's Changed

• 🚚 Revert Collection.description back to unlimited length TextField by @falexwolf in #2369

Full Changelog: 1.0.3...1.0.4

Release 1.0.3

See https://docs.lamin.ai/changelog/2025#db-1-0-3

What's Changed

• 💚 Fix docs build by dropping SpatialData type annotations on central Curator class by @falexwolf in #2364
• 🚸 In ln.track(), do not update transform description if it is None and improve logging in RStudio sessions by @falexwolf in #2365

Full Changelog: 1.0.2...1.0.3

Release 1.0.2

See https://docs.lamin.ai/changelog/2025#db-1-0-2

What's Changed

• 🚚 Polish migrations lamindb v1 by @falexwolf in #2363

Full Changelog: 1.0.1...1.0.2

Release 1.0.1

See https://docs.lamin.ai/changelog/2025#db-1-0-0

What's Changed

• 🐛 Block non-admin users from integrating lnschema-core by @falexwolf in #2362

Full Changelog: 1.0.0...1.0.1

Release 1.0.0

See https://docs.lamin.ai/changelog/2025#db-1-0-0

What's Changed

• 🐛 Fix feature set renaming by @sunnyosun in #2288
• 🎨 Proper type check of FeatureSet rename by @sunnyosun in #2289
• 🐛 Let Curator.from_tiledbsoma() validate and annotate all .obs columns by @falexwolf in #2287
• ✨ Allow to register artifacts with http urls by @Koncopd in #2291
• 🎨 Raise ValueError when trying to search a None value by @Zethson in #2294
• 🎨 Check organism parameter type in curator by @Zethson in #2297
• ✅ Check reading X in tiledbsoma tests by @Koncopd in #2298
• 🎨 Fix NA values in Curator.add_new_from by @sunnyosun in #2299
• ⚡️ Make lamin_run_uid categorical in tiledbsoma stores by @Koncopd in #2300
• 🚸 Simplify installation & API overview by @falexwolf in #2302
• ✨ Add SpatialDataCurator by @Zethson in #2290
• ✏️ Fix NA values in Curator.add_new_from by @sunnyosun in #2305
• ⬆️ Release submodules by @sunnyosun in #2306
• ⬆️ Make tiledbsoma integration compatible with tiledbsoma==1.15.0 by @Koncopd in #2307
• 👷 Isolate curator tests by @Zethson in #2304
• 🚸 Improve ln.track() by @falexwolf in #2308
• 🐛 Fix source in from_values by @sunnyosun in #2310
• 🏗️ Integrate lnschema-core into lamindb by @falexwolf in #2309
• 🐛 Only map synonyms when field is name by @sunnyosun in #2312
• ♻️ Eliminate mocks from base by @Koncopd in #2315
• 🚸 Only auto-search ._name_field on sub-classes of CanCurate by @falexwolf in #2319
• ⬇️ Upper bound scipy because 1.15.0 is incompatible with anndata backed sparse by @Koncopd in #2321
• 📝 Polish track notebook by @falexwolf in #2322
• ✨ Capture logs of scripts during ln.track() by @falexwolf in #2325
• 🎨 Add ruff notebook formatting & remove F401 ignore by @Zethson in #2327
• ✨ Hide underscore attributes in repr by @Zethson in #2329
• ✨ Use etag as hash for http Artifacts by @Koncopd in #2330
• 🐛 Fix signal outside main thread by @Koncopd in #2333
• ✨ Also search git blob hash in non-default branches by @Zethson in #2332
• 🥅 Clear error on running track in an interactive session by @Koncopd in #2334
• 🚸 Check hash equality on transform if finding key by @falexwolf in #2337
• 🚚 Database migrations for lamindb 1.0a1 by @falexwolf in #2323
• 🚚 Database migrations for lamindb 1.0a2 by @falexwolf in #2338
• 🎨 Deprecate n_objects, introduce better deprecated decorator by @falexwolf in #2339
• 🚚 Deprecate the --schema argument of lamin init in favor of --modules by @falexwolf in #2340
• 🎨 Raise error when modifying key by @sunnyosun in #2326
• 🎨 Support | seperated multi-values in Curator by @sunnyosun in #2341
• 🚚 Integrate ourprojects into lamindb and migrate to 1.0a3 by @falexwolf in #2342
• ⬆️ Upgrade anndata by @Koncopd in #2344
• 🚚 Migrate to lamindb 1.0a4 by @falexwolf in #2343
• ♻️ Refactor key and name change checks by @Koncopd in #2345
• 🐛 Skip deleting storage when deleting outdated versions of folder-like artifacts by @Koncopd in #2349
• 🚚 Rename FeatureSet to Schema and migrate to lamindb 1.0a5 by @falexwolf in #2348
• ✨ Allow filtering by multiple obs columns in MappedCollection by @Koncopd in #2352
• 💚 Fix downstream integration tests by @falexwolf in #2351
• 🚚 Migrate to 1.0a6 by @falexwolf in #2353
• 🚸 For the user, do not yet rename FeatureSet to Schema by @falexwolf in #2354
• 🚸 More backward compat by @falexwolf in #2355
• 🚸 Improve migration dialogue and allow None in connect() by @falexwolf in #2357
• 🔊 Eliminate warning by @falexwolf in #2359
• 👷 Do not skip curator on push events, do not green checkmark it if it's not being run by @falexwolf in #2360

Full Changelog: 0.77.3...1.0.0

Release 1.0rc1

See https://docs.lamin.ai/changelog/2025#db-1-0-0

What's Changed

• 🐛 Fix feature set renaming by @sunnyosun in #2288
• 🎨 Proper type check of FeatureSet rename by @sunnyosun in #2289
• 🐛 Let Curator.from_tiledbsoma() validate and annotate all .obs columns by @falexwolf in #2287
• ✨ Allow to register artifacts with http urls by @Koncopd in #2291
• 🎨 Raise ValueError when trying to search a None value by @Zethson in #2294
• 🎨 Check organism parameter type in curator by @Zethson in #2297
• ✅ Check reading X in tiledbsoma tests by @Koncopd in #2298
• 🎨 Fix NA values in Curator.add_new_from by @sunnyosun in #2299
• ⚡️ Make lamin_run_uid categorical in tiledbsoma stores by @Koncopd in #2300
• 🚸 Simplify installation & API overview by @falexwolf in #2302
• ✨ Add SpatialDataCurator by @Zethson in #2290
• ✏️ Fix NA values in Curator.add_new_from by @sunnyosun in #2305
• ⬆️ Release submodules by @sunnyosun in #2306
• ⬆️ Make tiledbsoma integration compatible with tiledbsoma==1.15.0 by @Koncopd in #2307
• 👷 Isolate curator tests by @Zethson in #2304
• 🚸 Improve ln.track() by @falexwolf in #2308
• 🐛 Fix source in from_values by @sunnyosun in #2310
• 🏗️ Integrate lnschema-core into lamindb by @falexwolf in #2309
• 🐛 Only map synonyms when field is name by @sunnyosun in #2312
• ♻️ Eliminate mocks from base by @Koncopd in #2315
• 🚸 Only auto-search ._name_field on sub-classes of CanCurate by @falexwolf in #2319
• ⬇️ Upper bound scipy because 1.15.0 is incompatible with anndata backed sparse by @Koncopd in #2321
• 📝 Polish track notebook by @falexwolf in #2322
• ✨ Capture logs of scripts during ln.track() by @falexwolf in #2325
• 🎨 Add ruff notebook formatting & remove F401 ignore by @Zethson in #2327
• ✨ Hide underscore attributes in repr by @Zethson in #2329
• ✨ Use etag as hash for http Artifacts by @Koncopd in #2330
• 🐛 Fix signal outside main thread by @Koncopd in #2333
• ✨ Also search git blob hash in non-default branches by @Zethson in #2332
• 🥅 Clear error on running track in an interactive session by @Koncopd in #2334
• 🚸 Check hash equality on transform if finding key by @falexwolf in #2337
• 🚚 Database migrations for lamindb 1.0a1 by @falexwolf in #2323
• 🚚 Database migrations for lamindb 1.0a2 by @falexwolf in #2338
• 🎨 Deprecate n_objects, introduce better deprecated decorator by @falexwolf in #2339
• 🚚 Deprecate the --schema argument of lamin init in favor of --modules by @falexwolf in #2340
• 🎨 Raise error when modifying key by @sunnyosun in #2326
• 🎨 Support | seperated multi-values in Curator by @sunnyosun in #2341
• 🚚 Integrate ourprojects into lamindb and migrate to 1.0a3 by @falexwolf in #2342
• ⬆️ Upgrade anndata by @Koncopd in #2344
• 🚚 Migrate to lamindb 1.0a4 by @falexwolf in #2343
• ♻️ Refactor key and name change checks by @Koncopd in #2345
• 🐛 Skip deleting storage when deleting outdated versions of folder-like artifacts by @Koncopd in #2349
• 🚚 Rename FeatureSet to Schema and migrate to lamindb 1.0a5 by @falexwolf in #2348
• ✨ Allow filtering by multiple obs columns in MappedCollection by @Koncopd in #2352
• 💚 Fix downstream integration tests by @falexwolf in #2351
• 🚚 Migrate to 1.0a6 by @falexwolf in #2353
• 🚸 For the user, do not yet rename FeatureSet to Schema by @falexwolf in #2354
• 🚸 More backward compat by @falexwolf in #2355
• 🚸 Improve migration dialogue and allow None in connect() by @falexwolf in #2357
• 🔊 Eliminate warning by @falexwolf in #2359
• 👷 Do not skip curator on push events, do not green checkmark it if it's not being run by @falexwolf in #2360

Full Changelog: 0.77.3...1.0rc1

Release 0.77.3

See https://docs.lamin.ai/changelog/2024#db-0-77-3

What's Changed

• ✅ More tests for Artifact.df() by @falexwolf in #2241
• ⬆️ Add a lower bound for pandas by @Koncopd in #2242
• ✨ Add Curator for tiledbsoma stores by @Koncopd in #2228
• 🐛 Fix the error on existing cache on copy to cache in Artifact.save by @Koncopd in #2248
• 🎨 Update describe layout by @sunnyosun in #2247
• 🐛 Fix IPython import error by @Koncopd in #2250
• ⬆️ Update wetlab by @sunnyosun in #2251
• ⬆️ Upgrade lamindb-setup (unpin supabase) by @Koncopd in #2252
• 🐛 Fix display of (non-categorical) str features in .describe() by @sunnyosun in #2253
• 🎨 Remove quotes and rename sessions in describe by @sunnyosun in #2259
• 🐛 Fix the error on special chars in search strings by @Koncopd in #2261
• ✨ Add an artifact loader for .yaml by @Koncopd in #2270
• 🐛 Better error behavior for repeated calls of standardize by @Zethson in #2266
• 🐛 Fix organism in curator.standardize by @sunnyosun in #2272
• 🐛 Fix very long runtimes for Artifact.describe by @Koncopd in #2273
• ⬆️ Upgrade lamin-utils to 0.13.10 (escape search string in bionty search) by @Koncopd in #2274
• ✏️ Fix typos in describe sections by @falexwolf in #2271
• 🐛 Fix curator.validate from public by @sunnyosun in #2275
• 🛠️ Update wetlab by @Zethson in #2277
• 🔊 Log tiledbsoma write path by @Koncopd in #2278
• 🩹 Enable annotating existing artifacts with Curate.save_artifact() by @falexwolf in #2280
• 📝 Safer gene mapping by @Zethson in #2283
• 🚸 Improve feedback on not-up-to-date notebook content by @falexwolf in #2284

Full Changelog: 0.77.2...0.77.3

Release 0.77.2

See https://docs.lamin.ai/changelog/2024#db-0-77-2

What's Changed

• ⬆️ Update core by @sunnyosun in #2197
• 🩹 Make search rules the same across all systems by @Koncopd in #2199
• 🎨 Make search in bionty consistent with the lamindb implementation by @Koncopd in #2205
• ♻️ Simplify coupling of bionty and lamindb-setup by @falexwolf in #2207
• 💚 Fix tiledbsoma installation in CI by @Koncopd in #2208
• 📝 Move tutorial and tutorial2 to lamin-docs by @falexwolf in #2184
• 📝 Prettify gene symbols guide & logging by @falexwolf in #2210
• 🐛 Check protocol first in check_path_is_child_of_root by @Koncopd in #2215
• 🩹 Add a lower bound on nbconvert to avoid problems with lxml by @Koncopd in #2216
• ✨ Support dtype = 'datetime' and improve annotating with, retrieving & removing feature values by @falexwolf in #2218
• 👷 Simplify issue templates by @falexwolf in #2220
• ♻️ Add .standardize() to Curator and refactor by @sunnyosun in #2186
• ⬆️ Update custom schema submodules by @sunnyosun in #2223
• 🎨 Separate labels fetching from printing by @sunnyosun in #2225
• 🎨 Fix EHRCurator warning & validation by @Zethson in #2230
• ✨ Enable features with dtype = 'str' by @falexwolf in #2226
• 🏷️ Remove duplicated typing in Curator by @sunnyosun in #2232
• 🎨 Let .from_values() return RecordList and better treat categorical by @falexwolf in #2233
• 🎨 Centralize a small test dataset for curation & queries by @falexwolf in #2234
• 🏷️ Fix type of var_index in MuDataCurator by @Koncopd in #2239
• ✨ Enable to easily join features onto artifacts via Artifact.df() by @falexwolf in #2238
• 💄 Create a more intuitive artifact.describe() by @sunnyosun in #2236
• 🚸 Improve UX of db$track() and db$finish() by @falexwolf in #2213
• 🐛 Fix collection describe by @sunnyosun in #2240

Full Changelog: 0.77.0...0.77.2