📝 Update cellxgene-lamin to new docs artifacts convention (#141)

* Update cellxgene-lamin to new docs artifacts convention * Update noxfile.py * rm links to query-census * upd docs zip filenames --------- Co-authored-by: Koncopd <[email protected]>
laminlabs · Sep 11, 2024 · afe32a7 · afe32a7
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diff --git a/docs/includes/features-lamindb.md b/docs/includes/features-lamindb.md
@@ -1,7 +1,7 @@
 **Manage data & metadata with a unified Python API (“lakehouse”).**
 
 - Query & search across artifacts ({class}`~lamindb.Artifact`) & metadata records ({class}`~lamindb.core.Record`): {class}`~lamindb.core.Record.filter`, {class}`~lamindb.core.Record.search`
-- Query large array stores: {class}`~lamindb.Artifact.open` → [guide](/query-census)
+- Query large array stores: {class}`~lamindb.Artifact.open` → [guide](cellxgene)
 - Cache artifacts on disk & load them into memory: {class}`~lamindb.Artifact.cache`, {class}`~lamindb.Artifact.load`
 - Manage features & labels: {class}`~lamindb.Feature`, {class}`~lamindb.FeatureSet`, {class}`~lamindb.ULabel`
 - Plug-in custom [schemas](/schemas) & manage schema migrations

diff --git a/docs/integrations.md b/docs/integrations.md
@@ -16,7 +16,7 @@ Sync tracked scripts in lamindb with git commits: [guide](track.ipynb#sync-scrip
 
 ## Array stores
 
-- `tiledbsoma`: [inhouse guide](scrna-tiledbsoma) or [cellxgene](query-census)
+- `tiledbsoma`: [inhouse guide](scrna-tiledbsoma) or [cellxgene](cellxgene)
 - [DuckDB](rxrx)
 
 ## Visualization tools

diff --git a/noxfile.py b/noxfile.py
@@ -175,24 +175,22 @@ def pull_artifacts(session):
     Path("lamin-mlops/mnist.ipynb").rename("docs/mnist.ipynb")
 
     # cellxgene-lamin
-    pull_from_s3_and_unpack("cellxgene_lamin_docs.zip")
-    for path in Path("cellxgene_lamin_docs/").glob("*"):
-        if path.name.endswith(
-            ("cellxgene.ipynb", "census.ipynb", "cellxgene-curate.ipynb")
-        ):
+    pull_from_s3_and_unpack("cellxgene-lamin.zip")
+    for path in Path("cellxgene-lamin/").glob("*"):
+        if path.name.endswith(("cellxgene.ipynb", "cellxgene-curate.ipynb")):
             sync_path(path, Path("docs") / path.name)
 
     # lamin-spatial
-    pull_from_s3_and_unpack("rxrx_lamin_docs.zip")
-    for path in Path("rxrx_lamin_docs/").glob("*"):
+    pull_from_s3_and_unpack("lamin-spatial.zip")
+    for path in Path("lamin-spatial/").glob("*"):
         if path.name == "rxrx.ipynb":
             sync_path(path, Path("docs") / path.name)
         elif path.name == "vitessce.ipynb":
             sync_path(path, Path("docs") / path.name)
 
     # use-cases
-    pull_from_s3_and_unpack("lamin_usecases_docs.zip")
-    for path in Path("lamin_usecases_docs/").glob("*"):
+    pull_from_s3_and_unpack("lamin-usecases.zip")
+    for path in Path("lamin-usecases/").glob("*"):
         if (
             path.name == "index.md"
             or path.name == "usecases.md"