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🔖 Release lamindb 0.76.7 (#147)
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* 🔖 Release lamindb 0.76.7

* 💚 Fix
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@falexwolf
falexwolf committed Sep 18, 2024
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35 changes: 35 additions & 0 deletions docs/changelog/2024.md
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.. role:: small
```

## 2024-09-18 {small}`db 0.76.7 | bionty 0.50.2`

- ✨ Enable getting the latest run environment for a transform [PR](https://github.com/laminlabs/lamindb/pull/1944) [@falexwolf](https://github.com/falexwolf)
- ✨ Enable displaying images via `artifact.load()`, add documentation for artifact loaders [PR](https://github.com/laminlabs/lamindb/pull/1938) [@falexwolf](https://github.com/falexwolf)
- 🚸 Do not throw an error but prompt upon `ln.context.track()` in a notebook [PR](https://github.com/laminlabs/lamindb/pull/1925) [@falexwolf](https://github.com/falexwolf)
- 🚸 Allow to use `Collection.mapped()` without saving the collection [PR](https://github.com/laminlabs/lamindb/pull/1942) [@Koncopd](https://github.com/Koncopd)
- 🚸 Simplify CLI commands [PR](https://github.com/laminlabs/lamindb/pull/1945) [@falexwolf](https://github.com/falexwolf)
- 🚸 Add parameter validation in bionty [PR](https://github.com/laminlabs/bionty/pull/111) [@Zethson](https://github.com/Zethson)

:::{dropdown} Technical changes

- 🔊 More logging for `import_from_source` [PR](https://github.com/laminlabs/lamindb/pull/1934) [@sunnyosun](https://github.com/sunnyosun)
- 🔊 Warn instead of hint about missed input tracking [PR](https://github.com/laminlabs/lamindb/pull/1933) [@Koncopd](https://github.com/Koncopd)
- ✨ Add `n_observations` to `tiledbsoma`-like artifacts [PR](https://github.com/laminlabs/lamindb/pull/1930) [@Koncopd](https://github.com/Koncopd)
- 🎨 Remove `stream` argument from `artifact.load()` [PR](https://github.com/laminlabs/lamindb/pull/1941) [@Koncopd](https://github.com/Koncopd)

:::

:::{dropdown} Ontology versions

- 🍱 New Tissue version: uberon-2024-03-22 [PR](https://github.com/laminlabs/bionty/pull/118) [@Zethson](https://github.com/Zethson)
- 🍱 New Disease version: mondo-2024-05-08 [PR](https://github.com/laminlabs/bionty/pull/115) [@Zethson](https://github.com/Zethson)
- 🍱 New ExperimentalFactor version: efo-3.65.0 [PR](https://github.com/laminlabs/bionty/pull/113) [@Zethson](https://github.com/Zethson)
- 🍱 New CellType version: cl-2024-04-05 [PR](https://github.com/laminlabs/bionty/pull/112) [@Zethson](https://github.com/Zethson)

:::

:::{dropdown} Use case changes

- ✨ Add support for cellxgene-schema 5.1.0 [PR](https://github.com/laminlabs/cellxgene-lamin/pull/97) [@Zethson](https://github.com/Zethson)
- 📝 Integrate cellxgene guides and add data loader examples [PR](https://github.com/laminlabs/cellxgene-lamin/pull/100) [@Koncopd](https://github.com/Koncopd)
- 📝 Track all AnnData inputs in `scrna-tiledbsoma` [PR](https://github.com/laminlabs/lamin-usecases/pull/153) [@Koncopd](https://github.com/Koncopd)

:::

## 2024-09-09 {small}`db 0.76.6 | bionty 0.50`

- ✨ Enable negations in `filter()` [PR](https://github.com/laminlabs/lamindb/pull/1913) [@falexwolf](https://github.com/falexwolf)
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- :speaker: Consistent handling of yes/no logging [PR](https://github.com/laminlabs/bionty/pull/114) [@falexwolf](https://github.com/falexwolf)
- 🍱 New Tissue version: uberon-2024-03-22 [PR](https://github.com/laminlabs/bionty/pull/118) [@Zethson](https://github.com/Zethson)
- 🔊 More logging for `import_from_source` [PR](https://github.com/laminlabs/bionty/pull/117) [@sunnyosun](https://github.com/sunnyosun)
- 🍱 New Disease version: mondo-2024-05-08 [PR](https://github.com/laminlabs/bionty/pull/115) [@Zethson](https://github.com/Zethson)
- 🍱 New ExperimentalFactor version: efo-3.65.0 [PR](https://github.com/laminlabs/bionty/pull/113) [@Zethson](https://github.com/Zethson)
- 🍱 New CellType version: cl-2024-04-05 [PR](https://github.com/laminlabs/bionty/pull/112) [@Zethson](https://github.com/Zethson)
- :sparkles: Add parameter validation [PR](https://github.com/laminlabs/bionty/pull/111) [@Zethson](https://github.com/Zethson)
- 📝 Add explicit sphinx headers [PR](https://github.com/laminlabs/bionty/pull/110) [@Zethson](https://github.com/Zethson)
- 🐛 Fix parents update [PR](https://github.com/laminlabs/bionty/pull/107) [@sunnyosun](https://github.com/sunnyosun)
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- 🚸 Simplify CLI commands [PR](https://github.com/laminlabs/lamindb/pull/1945) [@falexwolf](https://github.com/falexwolf)
- 🚸 Simplify CLI commands [PR](https://github.com/laminlabs/lamin-cli/pull/72) [@falexwolf](https://github.com/falexwolf)
- ✨ Enable getting the latest run environment for a transform [PR](https://github.com/laminlabs/lamindb/pull/1944) [@falexwolf](https://github.com/falexwolf)
- ✨ Enable getting the latest run environment for a transform [PR](https://github.com/laminlabs/lamin-cli/pull/71) [@falexwolf](https://github.com/falexwolf)
- 🚸 Do not throw an error but prompt upon `ln.context.track()` in a notebook [PR](https://github.com/laminlabs/lamindb/pull/1925) [@falexwolf](https://github.com/falexwolf)
- ⚡️ Cleanup on error in Artifact.load [PR](https://github.com/laminlabs/lamindb/pull/1943) [@Koncopd](https://github.com/Koncopd)
- ✨ Allow to use Collection.mapped without saving [PR](https://github.com/laminlabs/lamindb/pull/1942) [@Koncopd](https://github.com/Koncopd)
- 🎨 Remove `stream` argument from `artifact.load()` [PR](https://github.com/laminlabs/lamindb/pull/1941) [@Koncopd](https://github.com/Koncopd)
- ✨ Enable displaying images, document artifact loaders [PR](https://github.com/laminlabs/lamindb/pull/1938) [@falexwolf](https://github.com/falexwolf)
- 🎨 No longer populate `storage_id` in instance table during `init` [PR](https://github.com/laminlabs/lamindb-setup/pull/856) [@falexwolf](https://github.com/falexwolf)
- 🔊 More logging for import_from_source [PR](https://github.com/laminlabs/lamindb/pull/1934) [@sunnyosun](https://github.com/sunnyosun)
- 🔊 Warning instead of hint in _track_run_input [PR](https://github.com/laminlabs/lamindb/pull/1933) [@Koncopd](https://github.com/Koncopd)
- 🎨 Speed up feature add_from [PR](https://github.com/laminlabs/lamindb/pull/1931) [@sunnyosun](https://github.com/sunnyosun)
- ✨ Add n_observations to tiledbsoma artifacts [PR](https://github.com/laminlabs/lamindb/pull/1930) [@Koncopd](https://github.com/Koncopd)
- ✅ Test re-login in CLI [PR](https://github.com/laminlabs/lamindb/pull/1929) [@Koncopd](https://github.com/Koncopd)
- ✅ Test re-login [PR](https://github.com/laminlabs/lamin-cli/pull/70) [@Koncopd](https://github.com/Koncopd)
- 🐛 Proper re-login if api_key is present in env files [PR](https://github.com/laminlabs/lamindb-setup/pull/853) [@Koncopd](https://github.com/Koncopd)
- ✨ Add UX issue template [PR](https://github.com/laminlabs/lamindb/pull/1928) [@Zethson](https://github.com/Zethson)
- ✨ Improve curation save terms msg [PR](https://github.com/laminlabs/lamindb/pull/1926) [@Zethson](https://github.com/Zethson)
- 🎨 Fix issue templates labels [PR](https://github.com/laminlabs/lamindb/pull/1927) [@Zethson](https://github.com/Zethson)
- 🔧 Use LAMINDB_DJANGO_DATABASE_URL instead of DATABASE_URL [PR](https://github.com/laminlabs/lamindb-setup/pull/852) [@Koncopd](https://github.com/Koncopd)
- ✅ Use connect_instance_new for Koncopd, sunnyosun and falexwolf for local testing [PR](https://github.com/laminlabs/lamindb-setup/pull/851) [@Koncopd](https://github.com/Koncopd)
- ✅ Test connect_instance_new for anonymous [PR](https://github.com/laminlabs/lamindb-setup/pull/850) [@Koncopd](https://github.com/Koncopd)
- 🐛 Fix parents update [PR](https://github.com/laminlabs/lamindb/pull/1917) [@sunnyosun](https://github.com/sunnyosun)
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- 📝 Add data loader examples to cellxgene guide [PR](https://github.com/laminlabs/cellxgene-lamin/pull/100) [@Koncopd](https://github.com/Koncopd)
- ✨ Use uv tool for cellxgene-schema [PR](https://github.com/laminlabs/cellxgene-lamin/pull/99) [@Zethson](https://github.com/Zethson)
- ✨ Add support for schema 5.1.0 [PR](https://github.com/laminlabs/cellxgene-lamin/pull/97) [@Zethson](https://github.com/Zethson)
- 📝 Track all anndatas in scrna-tiledbsoma [PR](https://github.com/laminlabs/lamin-usecases/pull/153) [@Koncopd](https://github.com/Koncopd)
- Fix cellxgene-schema validate numpy error [PR](https://github.com/laminlabs/cellxgene-lamin/pull/95) [@Zethson](https://github.com/Zethson)
- 📝 Consistently use slice for arrays [PR](https://github.com/laminlabs/cellxgene-lamin/pull/93) [@Koncopd](https://github.com/Koncopd)
- 📝 Edit cellxgene guide [PR](https://github.com/laminlabs/cellxgene-lamin/pull/92) [@Koncopd](https://github.com/Koncopd)
- 📝 Reorganize and integrate tiledbsoma guide [PR](https://github.com/laminlabs/cellxgene-lamin/pull/91) [@Koncopd](https://github.com/Koncopd)
- 📝 Link access pages [PR](https://github.com/laminlabs/lamin-usecases/pull/152) [@Zethson](https://github.com/Zethson)
- 🏗️ Simplify repo and prettify notebooks [PR](https://github.com/laminlabs/lamin-mlops/pull/19) [@falexwolf](https://github.com/falexwolf)

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