🎨 Fix validation

Signed-off-by: zethson <[email protected]>
laminlabs · Oct 21, 2024 · b694e1b · b694e1b
1 parent 8d48ffa
commit b694e1b
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Showing 2 changed files with 1 addition and 20 deletions.
diff --git a/cellxgene_lamin/curate.py b/cellxgene_lamin/curate.py
@@ -97,7 +97,6 @@ def __init__(
             schema_version: The CELLxGENE schema version to curate against.
             verbosity: The verbosity level.
             using_key: A reference LaminDB instance.
-                Do not set to a different instance unless you have a copy of the laminlabs/cellxgene instance.
         """
         self.organism = organism
         self.using_key = using_key
@@ -118,7 +117,7 @@ def __init__(
                 self.schema_version
             ]
 
-        # Fetch AnnData obs to get appropriate sources and set defaults
+        # Fetch AnnData obs to be able to set defaults and get sources
         if isinstance(adata, ad.AnnData):
             self._adata_obs = adata.obs
         else:

diff --git a/docs/cellxgene-curate.ipynb b/docs/cellxgene-curate.ipynb
@@ -203,24 +203,6 @@
     "validated"
    ]
   },
-  {
-   "cell_type": "markdown",
-   "id": "76af04f5",
-   "metadata": {},
-   "source": [
-    "We add all validated genes:"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "99c71c20",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "curator.add_validated_from_var_index()"
-   ]
-  },
   {
    "cell_type": "markdown",
    "id": "19d016a6",