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✨ Add field support for bionty base #384

✨ Add field support for bionty base

✨ Add field support for bionty base #384

Workflow file for this run

name: build
on:
push:
branches: [main]
pull_request:
branches: [main, staging]
workflow_dispatch:
env:
BRANCH_NAME: ${{ github.head_ref || github.ref_name }}
jobs:
test:
runs-on: ubuntu-latest
env:
GITHUB_EVENT_NAME: ${{ github.event_name }}
strategy:
fail-fast: false
matrix:
python-version: ["3.11"]
group: ["bionty-unit", "bionty-docs"]
timeout-minutes: 25
steps:
- uses: actions/checkout@v4
- name: checkout lndocs
uses: actions/checkout@v4
with:
repository: laminlabs/lndocs
ssh-key: ${{ secrets.READ_LNDOCS }}
path: lndocs
ref: main
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- uses: actions/cache@v3
with:
path: ~/.cache/pre-commit
key: pre-commit-${{ runner.os }}-${{ hashFiles('.pre-commit-config.yaml') }}
- run: pip install "laminci@git+https://x-access-token:${{ secrets.LAMIN_BUILD_DOCS }}@github.com/laminlabs/laminci"
- run: |
uv pip install --system rich
uv pip install --system ipywidgets
- uses: aws-actions/configure-aws-credentials@v4
with:
aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }}
aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
aws-region: eu-central-1
- run: nox -s lint
if: matrix.python-version == '3.11' && matrix.group == 'bionty-unit'
- run: nox -s "build(group='${{ matrix.group }}')"
- uses: actions/upload-artifact@v3
with:
name: coverage--${{ matrix.group }}
path: .coverage
include-hidden-files: true
- uses: nwtgck/[email protected]
if: ${{ matrix.python-version == '3.11' && matrix.group == 'bionty-docs' }}
with:
publish-dir: "_build/html"
production-deploy: ${{ github.event_name == 'push' }}
github-token: ${{ secrets.GITHUB_TOKEN }}
enable-commit-comment: false
env:
NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
coverage:
needs: test
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.11"
- run: |
pip install -U pip uv
uv pip install --system coverage[toml]
uv pip install --system --no-deps .
- uses: actions/download-artifact@v3
- name: run coverage
run: |
coverage combine coverage--*/.coverage*
coverage report --fail-under=0
coverage xml
- uses: codecov/codecov-action@v2
with:
token: ${{ secrets.CODECOV_TOKEN }}