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{% set name = "cylinter" %} | ||
{% set version = "0.0.49" %} | ||
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package: | ||
name: "{{ name|lower }}" | ||
version: "{{ version }}" | ||
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source: | ||
git_url: https://github.com/labsyspharm/cylinter.git | ||
git_tag: v0.0.49 | ||
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build: | ||
number: 0 | ||
script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv " | ||
entry_points: | ||
- cylinter=cylinter.cylinter:main | ||
noarch: python | ||
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requirements: | ||
build: | ||
- poetry | ||
host: | ||
- pip | ||
- python | ||
- poetry | ||
run: | ||
- python | ||
- cellcutter | ||
- hdbscan | ||
- joblib | ||
- magicgui | ||
- matplotlib <3.6 # avoids segmentation faults when closing silhouette plot in clustering module | ||
- napari | ||
- numpy | ||
- natsort | ||
- numba | ||
- pandas | ||
- pyarrow | ||
- pyqt | ||
- pyyaml | ||
- qtpy | ||
- scikit-image | ||
- scikit-learn <=1.2.2 # avoids InconsistentVersionWarning: Trying to unpickle estimator Pipeline from version 1.2.2 when using version 1.3.1. because artifact detection model was built using v1.2.2 | ||
- seaborn | ||
- tifffile | ||
- umap-learn | ||
- zarr | ||
- svglib | ||
- pypdf2 | ||
- imagecodecs # MIBI data fails to be read without this | ||
- opencv | ||
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test: | ||
imports: | ||
- cylinter | ||
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about: | ||
home: https://labsyspharm.github.io/cylinter/ | ||
license: MIT | ||
license_family: BSD | ||
summary: Quality Control Software for Multiplex Microscopy |