Merge pull request #4 from labouz/versionbump

update version

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: PMCfetchR
 Title: Extract Full-Text Articles from NIH NCBI's PMC Articles Dataset in AWS Cloud
-Version: 0.0.0.9000
+Version: 1.0.0
 Authors@R: 
     person("Layla", "Bouzoubaa", , "[email protected]", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-6616-0950"))
@@ -23,7 +23,8 @@ Imports:
     aws.s3,
     magrittr,
     rlang,
-    xml2
+    xml2,
+    stringr
 Suggests: 
     testthat (>= 3.0.0)
 Config/testthat/edition: 3

NAMESPACE

@@ -9,6 +9,8 @@ importFrom(jsonlite,fromJSON)
 importFrom(magrittr,"%>%")
 importFrom(purrr,map_df)
 importFrom(rlang,arg_match)
+importFrom(stringr,str_extract)
+importFrom(stringr,str_remove)
 importFrom(tibble,tibble)
 importFrom(tidypmc,pmc_text)
 importFrom(utils,capture.output)

R/fetch_fulltext.R

@@ -14,7 +14,7 @@
 #' @importFrom magrittr %>%
 #' @importFrom rlang arg_match
 #' @importFrom xml2 read_xml
-#' @importFrom stringr str_extract
+#' @importFrom stringr str_extract str_remove
 #' @export
 #'
 #' @examples
@@ -72,7 +72,7 @@ fetch_fulltext <- function(id, vars = c("all", "section", "paragraph", "sentence
   # FAILSAFE FUNCTION THAT GETS CALLED IF NOTHING IS RETURNED FROM AWS------------
   fetch_paper_eutility <- function (pmcid) {
     # strip 'PMC' from PMCID
-    id <- str_remove(pmcid, "PMC")
+    id <- stringr::str_remove(pmcid, "PMC")
     api <- paste0("https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&id=",id)
 
     response <- xml2::read_xml(api)