Skip to content

Commit

Permalink
CDC updates
Browse files Browse the repository at this point in the history
  • Loading branch information
@kruggles7
kruggles7 committed Jul 1, 2014
1 parent d57c3f2 commit 27ceca7
Show file tree
Hide file tree
Showing 43 changed files with 4,642 additions and 0 deletions.
344 changes: 344 additions & 0 deletions prescriptiondrugs/OR_plot_Rxdrugs.m
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,344 @@
%make heatmaps out of the relative risk matrix

cd ..
cd ..
cd matrices
load OR_2013
load qlabel_033014

drugs={'Q25','Q27','Q29','Q31','Q32'};
violence={'Q01', 'Q02', 'Q03', 'Q04', 'Q05', 'Q06','Q10', 'Q74', 'Q75', 'Q50', 'Q51'};
suicide={'Q11','Q12','Q13','Q14','Q16'};
alcohol_marijuana={'Q17','Q18','Q19','Q21','Q23','Q53', 'Q55'}; % 'Q50','Q51'};
disordered_eat={'Q38','Q39','Q40'};
cigarette={'Q53','Q55','Q57','Q58','Q59'};

ques='Q79';
OR=oddsratio2013;
[r,c]=size(OR);
OR=OR(2:r,:);
indx=find(strcmp(OR(:,1),'Q79')==1); %put in the number for Rx drugs
OR=OR(indx,:);

purple_grey=[99/255 86/255 136/255];
light_purple=[106/255 90/255 205/255];
green_blue=[67/255 205/255 128/255];
green=[0/255 205/255 102/255];
orange=[255/255 127/255 0/255];
blue=[24/255 116/255 205/255];
salmon=[205/255 51/255 51/255];
mauve=[205/255 96/255 144/255];
magenta=[205/255 41/255 144/255];
grey1=[192/255 192/255 192/255];
grey2=[97/255 97/255 97/255];

q1='Q79';
xlab=OR(:,2);
plot_mat=cell2mat(OR(:,7:9));
[indx_r, indx_c]=find(plot_mat<100000);
indx_ru=unique(indx_r);
plot_mat2=plot_mat(indx_ru,:);
xlab2=xlab(indx_ru,:);
indx=find(plot_mat2==0);
plot_mat2(indx)=NaN;

[r,c]=size(plot_mat2);
%x={'2009', '2011', '2013'};
x=1:r;
for j=1:3
if j==1
color=[24/255 116/255 205/255]; %blue
elseif j==2
color=[0/255 205/255 102/255]; %green
elseif j==3
color=[255/255 127/255 0/255]; %orange
%elseif
% color=[205/255 0/255 0/255]; %red
end
y=plot_mat2(:,j);
scatter(x, y, 5, color, 'filled');
hold on
end
avg=nanmean(plot_mat2,2);
scatter(x, avg, 5, color, 'filled');
hold off
set(gca,'XTickLabel', xlab);
cd ..
cd programs
cd prescriptiondrugs
cd results

saveas (gcf,'PO_OR.fig');
close


%drugs-----------
count=1;
druglab=cell.empty;
for i=1:numel(drugs)
indx=find(strcmp(xlab2,drugs{i})==1);
if numel(indx)>0
plot_drugs(count,:)=plot_mat2(indx,:);
druglab{count,1}=drugs{i};
count=count+1;
end
end

for i=1:numel(alcohol_marijuana)
indx=find(strcmp(xlab2,alcohol_marijuana{i})==1);
if numel(indx)>0
plot_drugs(count,:)=plot_mat2(indx,:);
druglab{count,1}=alcohol_marijuana{i};
count=count+1;
end
end

%f1=subplot(2,3,1);
[r,c]=size(plot_drugs);
%x={'2009', '2011', '2013'};
x=1:r;
for j=1:3
if j==1
color=[24/255 116/255 205/255]; %blue
elseif j==2
color=[0/255 205/255 102/255]; %green
%elseif
% color=[255/255 127/255 0/255]; %orange
elseif j==3
color=[205/255 0/255 0/255]; %red
end
y=plot_drugs(:,j);
scatter(x, y,20,'b','o','filled');
hold on
end
avg=nanmean(plot_drugs,2);
for i=1:numel(x)
x1=x(i)-0.25;
x2=x(i)+0.25;
x_=[x1,x2];
y_=[avg(i),avg(i)];
plot(x_,y_, 'k');
end
%hold off
set(gca,'Xtick',1:r);
label_new={'Ever used cocaine', 'Ever used heroin', 'Ever used methamphetamine', 'Ever injected Drugs', 'Ever used Ecstasy', 'Ever drink alcohol','Drank alcohol*','Had 5+ alcoholic drinks*', 'Ever used marijuana', 'Used marijuana*', 'Ever smoked cigarettes', 'Smoked cigarettes*'};
set(gca,'XTickLabel', label_new);
xlim([0,r+1]);
ylim([0 25]);
title('Association between Rx Drug use and Drug, Alcohol and Cigarette Use', 'FontSize', 12, 'FontWeight', 'bold');
cd ..
rotateXLabels(gca,45)
cd results
ylabel('Odds Ratio with Rx Drug Use', 'FontSize', 12);
set (gca, 'FontSize', 12);
saveas (gcf,'Drug_OR.fig');
print (gcf, '-dpdf', 'Fig3A.pdf');
close

%suicide and disordered eating-----------
count=1;
suicide_lab=cell.empty;
plot_suicide=double.empty;
for i=1:numel(suicide)
indx=find(strcmp(xlab2,suicide{i})==1);
if numel(indx)>0
plot_suicide(count,:)=plot_mat2(indx,:);
suicide_lab{count,1}=suicide{i};
count=count+1;
end
end

for i=1:numel(disordered_eat)
indx=find(strcmp(xlab2,disordered_eat{i})==1);
if numel(indx)>0
plot_suicide(count,:)=plot_mat2(indx,:);
suicide_lab{count,1}=disordered_eat{i};
count=count+1;
end
end

%f1=subplot(2,3,1);
[r,c]=size(plot_suicide);
%x={'2009', '2011', '2013'};
x=1:r;
for j=1:3
if j==1
color=[24/255 116/255 205/255]; %blue
elseif j==2
color=[0/255 205/255 102/255]; %green
%elseif
% color=[255/255 127/255 0/255]; %orange
elseif j==3
color=[205/255 0/255 0/255]; %red
end
y=plot_suicide(:,j);
scatter(x, y, 20,'b','o','filled');
hold on
end
avg=nanmean(plot_suicide,2);
for i=1:numel(x)
x1=x(i)-0.25;
x2=x(i)+0.25;
x_=[x1,x2];
y_=[avg(i),avg(i)];
plot(x_,y_, 'k');
end
%hold off
set(gca,'Xtick',1:r);
label_new={'Felt sad or hopeless^', 'Considered suicide^', 'Planned suicide^', 'Was injured during suicide attempt^', 'Attempted Suicide^', 'Fasted to lose weight*', 'Took pill to lose weight*','Vomited to lose weight*'};
set(gca,'XTickLabel', label_new);
xlim([0,r+1]);
title('Association between Rx Drug use and Suicide, Disordered Eating', 'FontSize', 12, 'FontWeight', 'bold');
cd ..
rotateXLabels(gca,45)
cd results
ylabel('Odds Ratio with Rx Drug Use', 'FontSize', 12);
ylim([0 10]);
set (gca, 'FontSize', 12);
saveas (gcf,'suicide_eating_OR.fig');
print (gcf, '-dpdf', 'Fig3B.pdf');
close

%violence/safety-----------
count=1;
safe_lab=cell.empty;
plot_safe=double.empty;
for i=1:numel(violence)
indx=find(strcmp(xlab2,violence{i})==1);
if numel(indx)>0
plot_safe(count,:)=plot_mat2(indx,:);
safe_lab{count,1}=violence{i};
count=count+1;
end
end


%f1=subplot(2,3,1);
[r,c]=size(plot_safe);
%x={'2009', '2011', '2013'};
x=1:r;
for j=1:3
if j==1
color=[24/255 116/255 205/255]; %blue
elseif j==2
color=[0/255 205/255 102/255]; %green
%elseif
% color=[255/255 127/255 0/255]; %orange
elseif j==3
color=[205/255 0/255 0/255]; %red
end
y=plot_safe(:,j);
scatter(x, y, 20,'b','o','filled');
hold on
end
avg=nanmean(plot_safe,2);
for i=1:numel(x)
x1=x(i)-0.25;
x2=x(i)+0.25;
x_=[x1,x2];
y_=[avg(i),avg(i)];
plot(x_,y_, 'k');
end
%hold off
set(gca,'Xtick',1:r);
label_new={'Carried a weapon*', 'Carried a gun*', 'Carried a weapon at school*', 'Felt unsafe at school*', 'Been threatened at school*', 'Been in a fight*','Ever been forced to have sex', 'Been bullied at school^', 'Been electronically bullied^', 'Ridden with a driver who was drinking*', 'Driven while drinking*'};
set(gca,'XTickLabel', label_new);
xlim([0,r+1]);
title('Association between Rx Drug use and Physical Violence, School Safety', 'FontSize', 12, 'FontWeight', 'bold');
cd ..
rotateXLabels(gca,45)
cd results
ylabel('Odds Ratio with Rx Drug Use', 'FontSize', 12);
ylim([0 10]);
set (gca, 'FontSize', 12);
saveas (gcf,'violence_OR.fig');
print (gcf, '-dpdf', 'Fig3C.pdf');
%close

%
% %drugs-----------
% count=1;
% druglab=cell.empty;
% for i=1:numel(drugs)
% indx=find(strcmp(xlab2,drugs{i})==1);
% if numel(indx)>0
% plot_drugs(count,:)=plot_mat2(indx,:);
% druglab{count,1}=drugs{i};
% count=count+1;
% end
% end
%
% f1=subplot(2,3,1);
% [r,c]=size(plot_drugs);
% %x={'2009', '2011', '2013'};
% x=1:r;
% for j=1:3
% if j==1
% color=[24/255 116/255 205/255]; %blue
% elseif j==2
% color=[0/255 205/255 102/255]; %green
% %elseif
% % color=[255/255 127/255 0/255]; %orange
% elseif j==3
% color=[205/255 0/255 0/255]; %red
% end
% y=plot_drugs(:,j);
% scatter(x, y, 15, 'b','o', 'filled');
% hold on
% end
% avg=mean(plot_drugs,2);
% for i=1:numel(x)
% x1=x(i)-0.25;
% x2=x(i)+0.25;
% x_=[x1,x2];
% y_=[avg(i),avg(i)];
% plot(x_,y_);
% end
% %hold off
% set(gca,'Xtick',1:r);
% set(gca,'XTickLabel', druglab);
% xlim([0,r+1]);
%
% %alcohol_marijuana------
% %drugs-----------
% count=1;
% alclab=cell.empty;
% for i=1:numel(alcohol_marijuana)
% indx=find(strcmp(xlab2,alcohol_marijuana{i})==1);
% if numel(indx)>0
% plot_alc(count,:)=plot_mat2(indx,:);
% alclab{count,1}=alcohol_marijuana{i};
% count=count+1;
% end
% end
%
% f2=subplot(2,3,2:3);
% [r,c]=size(plot_alc);
% %x={'2009', '2011', '2013'};
% x=1:r;
% for j=1:3
% if j==1
% color=[24/255 116/255 205/255]; %blue
% elseif j==2
% color=[0/255 205/255 102/255]; %green
% %elseif
% % color=[255/255 127/255 0/255]; %orange
% elseif j==3
% color=[205/255 0/255 0/255]; %red
% end
% y=plot_alc(:,j);
% scatter(x, y, 15, 'b','o', 'filled');
% hold on
% end
% avg=mean(plot_alc,2);
% for i=1:numel(x)
% x1=x(i)-0.25;
% x2=x(i)+0.25;
% x_=[x1,x2];
% y_=[avg(i),avg(i)];
% plot(x_,y_);
% end
% hold off
% set(gca,'Xtick',1:r);
% set(gca,'XTickLabel', alclab);
% xlim([0,r+1]);
Loading

0 comments on commit 27ceca7

Please sign in to comment.