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Changes due to fix in how PyGenePlexus scaled the data #57

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Changes due to fix in how PyGenePlexus scaled the data #57

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5710ab0
updated pygp version gcp function builds from
ChristopherMancuso Feb 2, 2025
a0f6d57
updated landing page figures
ChristopherMancuso Feb 2, 2025
e3ee2e2
updated RTD links for new pygp version
ChristopherMancuso Feb 2, 2025
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2 changes: 1 addition & 1 deletion frontend/src/components/Footer.tsx
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Expand Up @@ -23,7 +23,7 @@ const Footer = () => (
</Link>
<Link to="/about#terms-of-use">Terms of Use</Link>
<Link
to="https://pygeneplexus.readthedocs.io/en/v2.0.2/appendix/license.html"
to="https://pygeneplexus.readthedocs.io/en/v2.0.4/appendix/license.html"
showArrow={false}
>
License
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4 changes: 2 additions & 2 deletions frontend/src/pages/About.tsx
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Expand Up @@ -67,7 +67,7 @@ const AboutPage = () => {
flip
/>
<Button
to="https://pygeneplexus.readthedocs.io/en/v2.0.2/"
to="https://pygeneplexus.readthedocs.io/en/v2.0.4/"
text="Docs"
icon={<FaBook />}
tooltip="Detailed information on how to use the package and how to interpret results"
Expand All @@ -88,7 +88,7 @@ const AboutPage = () => {
flip
/>
<Button
to="https://pygeneplexus.readthedocs.io/en/v2.0.2/notes/faqs.html"
to="https://pygeneplexus.readthedocs.io/en/latest/notes/faqs.html"
text="FAQs"
icon={<FaQuestion />}
tooltip="Detailed help on some frequently asked questions"
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2 changes: 1 addition & 1 deletion frontend/src/pages/Analysis.tsx
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Expand Up @@ -136,7 +136,7 @@ const AnalysisPage = () => {
<>
<Summary results={results} />

<Link to="https://pygeneplexus.readthedocs.io/en/v2.0.2/">
<Link to="https://pygeneplexus.readthedocs.io/en/v2.0.4/">
Learn more
</Link>

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2 changes: 1 addition & 1 deletion frontend/src/pages/Home.tsx
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Expand Up @@ -34,7 +34,7 @@ const HomePage = () => {
</Flex>

<p className="center">
<Link to="https://pygeneplexus.readthedocs.io/en/v2.0.2/notes/faqs.html">
<Link to="https://pygeneplexus.readthedocs.io/en/latest/notes/faqs.html">
Looking for the old GenePlexus?
</Link>
</p>
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6 changes: 3 additions & 3 deletions frontend/src/pages/NewAnalysis.tsx
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Expand Up @@ -263,7 +263,7 @@ const NewAnalysisPage = () => {
};

/** limit options based on species */
/** https://pygeneplexus.readthedocs.io/en/v2.0.2/notes/data.html#preprocessed-data */
/** https://pygeneplexus.readthedocs.io/en/v2.0.4/notes/data.html#preprocessed-data */
const filteredNetworkOptions = networkOptions.filter((option) => {
if (
option.id === "BioGRID" &&
Expand Down Expand Up @@ -302,7 +302,7 @@ const NewAnalysisPage = () => {
toast(
<>
Selected options changed to be compatible with selected species.{" "}
<Link to="https://pygeneplexus.readthedocs.io/en/v2.0.2/notes/data.html">
<Link to="https://pygeneplexus.readthedocs.io/en/v2.0.4/notes/data.html">
Learn more
</Link>
.
Expand Down Expand Up @@ -483,7 +483,7 @@ const NewAnalysisPage = () => {
</>
}
/>
<Link to="https://pygeneplexus.readthedocs.io/en/latest/notes/data.html">
<Link to="https://pygeneplexus.readthedocs.io/en/v2.0.4/notes/data.html">
Learn more
</Link>
</Flex>
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2 changes: 1 addition & 1 deletion functions/convert_ids/convert_ids_deploy/requirements.txt
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@@ -1,4 +1,4 @@
# An example requirements file. If your function has other dependencies,
# add them below
functions-framework==3.*
geneplexus==2.0.2
geneplexus==2.0.4
2 changes: 1 addition & 1 deletion functions/ml/ml_deploy/requirements.txt
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@@ -1,5 +1,5 @@
# An example requirements file. If your function has other dependencies,
# add them below
functions-framework==3.*
geneplexus==2.0.2
geneplexus==2.0.4
flask-compress==1.*