Negative genes input, neutral genes output, CI deploy refactor, and o… #1
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Deploy backend functions and frontend app | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| path-changes: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - uses: dorny/paths-filter@v3 | |
| id: changes | |
| with: | |
| filters: | | |
| convert_ids: | |
| - "functions/convert_ids/convert_ids_deploy/**" | |
| ml: | |
| - "functions/ml/ml_deploy/**" | |
| outputs: | |
| convert_ids: ${{ steps.changes.outputs.convert_uds }} | |
| ml: ${{ steps.changes.outputs.ml }} | |
| deploy-convert-ids: | |
| needs: path-changes | |
| if: ${{ needs.path-changes.outputs.convert_ids == 'true' }} | |
| uses: ./.github/workflows/deploy-func.yaml | |
| with: | |
| func-name: "gpz-convert-ids" | |
| func-src-dir: "functions/convert_ids/convert_ids_deploy" | |
| func-entrypoint: "convert_ids" | |
| func-memory-mb: 1024 | |
| func-data-gcs-url: "gs://geneplexus-func-data/convert-ids/convert-ids_data.tar.gz" | |
| secrets: inherit | |
| deploy-ml: | |
| needs: path-changes | |
| if: ${{ needs.path-changes.outputs.ml == 'true' }} | |
| uses: ./.github/workflows/deploy-func.yaml | |
| with: | |
| func-name: "gpz-ml" | |
| func-src-dir: "functions/ml/ml_deploy" | |
| func-entrypoint: "ml" | |
| func-memory-mb: 8192 | |
| func-data-gcs-url: "gs://geneplexus-func-data/ml/ml_data.tar.gz" | |
| secrets: inherit | |
| deploy-frontend: | |
| needs: | |
| - deploy-convert-ids | |
| - deploy-ml | |
| # https://github.com/actions/runner/issues/491#issuecomment-850884422 | |
| if: | | |
| always() && | |
| (needs.deploy-convert-ids.result == 'success' || needs.deploy-convert-ids.result == 'skipped') && | |
| (needs.deploy-ml.result == 'success' || needs.deploy-ml.result == 'skipped') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Bun | |
| uses: oven-sh/setup-bun@v1 | |
| - name: Install packages | |
| run: bun install | |
| working-directory: frontend | |
| - if: runner.debug == '1' | |
| uses: mxschmitt/action-tmate@v3 | |
| - name: Build | |
| run: bun run build | |
| working-directory: frontend | |
| - name: Deploy to Netlify | |
| uses: nwtgck/[email protected] | |
| with: | |
| publish-dir: .frontend/dist | |
| production-branch: main | |
| production-deploy: true | |
| deploy-message: Deploy from GitHub Actions | |
| enable-pull-request-comment: false | |
| enable-commit-comment: false | |
| enable-commit-status: true | |
| overwrites-pull-request-comment: false | |
| enable-github-deployment: false | |
| fails-without-credentials: true | |
| env: | |
| NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }} | |
| NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }} | |
| timeout-minutes: 1 |