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Add cell ids #1

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@krassowski krassowski closed this Jul 30, 2023
@krassowski krassowski reopened this Jul 30, 2023
@krassowski krassowski force-pushed the add-cell-ids branch 2 times, most recently from 6f075eb to e844608 Compare July 31, 2023 16:24
paugier and others added 21 commits August 23, 2023 10:35
@paugier
Show traceback before raising ExecutionError (executablebooks#531)
aae27bb
@kianmeng @choldgraf
📚 DOCS: Fix typos and add codespell pre-commit hook (executablebooks#475
35ebd54 
)

Co-authored-by: Chris Holdgraf <[email protected]>
@dependabot
build(deps): bump actions/checkout from 3 to 4 (executablebooks#539)
5fe1ce2 
Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@je-cook
Patch file_regression fixture for sphinx backwards compatibility (exe…
540b756 
…cutablebooks#536)
@dependabot
build(deps): update ipython requirement (executablebooks#538)
4b1ad04 
Updates the requirements on [ipython](https://github.com/ipython/ipython) to permit the latest version.
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@rel-0.8.4...8.15.0)

---
updated-dependencies:
- dependency-name: ipython
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
build(deps-dev): update jupytext requirement (executablebooks#534)
618507e 
Updates the requirements on [jupytext](https://github.com/mwouts/jupytext) to permit the latest version.
- [Release notes](https://github.com/mwouts/jupytext/releases)
- [Changelog](https://github.com/mwouts/jupytext/blob/main/docs/CHANGELOG.md)
- [Commits](mwouts/jupytext@v1.11.2...v1.15.0)

---
updated-dependencies:
- dependency-name: jupytext
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (executablebooks#529)
66a304f 
updates:
- [github.com/asottile/pyupgrade: v3.7.0 → v3.10.1](asottile/pyupgrade@v3.7.0...v3.10.1)
- [github.com/psf/black: 23.3.0 → 23.9.1](psf/black@23.3.0...23.9.1)
- [github.com/PyCQA/flake8: 6.0.0 → 6.1.0](PyCQA/flake8@6.0.0...6.1.0)
- [github.com/pre-commit/mirrors-mypy: v1.4.1 → v1.5.1](pre-commit/mirrors-mypy@v1.4.1...v1.5.1)
- [github.com/codespell-project/codespell: v2.2.2 → v2.2.5](codespell-project/codespell@v2.2.2...v2.2.5)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@peytondmurray @agoose77 @pre-commit-ci
[Doc] Fix broken pytest fixture (executablebooks#546)
afb72ab 
* [Doc] Fix broken pytest fixture

* fix: support older sphinx

* fix: bugs in last patch

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* test: patch regression checks for now

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* chore: remove debug statements

* test: fix `replace`

* test; fix further typo

* test: drop unused fixture

* test: more misnomers

* test: use utf-8

---------

Co-authored-by: Angus Hollands <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@pre-commit-ci @agoose77
[pre-commit.ci] pre-commit autoupdate (executablebooks#542)
c6eef4f 
updates:
- [github.com/asottile/pyupgrade: v3.10.1 → v3.13.0](asottile/pyupgrade@v3.10.1...v3.13.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Angus Hollands <[email protected]>
@GlobalMin @pre-commit-ci @agoose77
Update copyright year to 2023 (executablebooks#537)
59854c2 
* Update copyright year to 2023

* Fix auto format elsewhere

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Angus Hollands <[email protected]>
@agoose77
fix: remove warnings for 3.11+ (executablebooks#547)
9ddc821 
* fix: remove warnings for 3.11+

* ci: use latest deps for mypy

* fix: use context-manager decorator

* chore: type-ignore
@dependabot
build(deps): update ipython requirement (executablebooks#548)
f4b845d 
Updates the requirements on [ipython](https://github.com/ipython/ipython) to permit the latest version.
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@rel-0.8.4...8.16.0)

---
updated-dependencies:
- dependency-name: ipython
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@pre-commit-ci @agoose77
[pre-commit.ci] pre-commit autoupdate (executablebooks#549)
32d3f5d 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0)
- [github.com/asottile/pyupgrade: v3.13.0 → v3.15.0](asottile/pyupgrade@v3.13.0...v3.15.0)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](codespell-project/codespell@v2.2.5...v2.2.6)

* docs: fix typo

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Angus Hollands <[email protected]>
@agoose77
MAINT: update linting (executablebooks#551)
d59ff0b 
* chore: bump pyupgrade version

* chore: update hooks & pyupgrade & ruff

* chore: drop flake8

* chore: run ruff/black on all files, update contributing

* chore: appease linter
@dependabot @agoose77
build(deps): update ipython requirement from <=8.16.0 to <=8.16.1 (ex…
9935dfc 
…ecutablebooks#550)

Updates the requirements on [ipython](https://github.com/ipython/ipython) to permit the latest version.
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](https://github.com/ipython/ipython/commits)

---
updated-dependencies:
- dependency-name: ipython
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Angus Hollands <[email protected]>
@michaelweinold
initial commit (executablebooks#554)
8337278
@pre-commit-ci @agoose77
[pre-commit.ci] pre-commit autoupdate (executablebooks#553)
dab0807 
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.0.291 → v0.0.292](astral-sh/ruff-pre-commit@v0.0.291...v0.0.292)
- [github.com/pre-commit/mirrors-mypy: v1.5.1 → v1.6.0](pre-commit/mirrors-mypy@v1.5.1...v1.6.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Angus Hollands <[email protected]>
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (executablebooks#556)
769d813 
updates:
- [github.com/psf/black: 23.9.1 → 23.10.0](psf/black@23.9.1...23.10.0)
- [github.com/astral-sh/ruff-pre-commit: v0.0.292 → v0.1.1](astral-sh/ruff-pre-commit@v0.0.292...v0.1.1)
- [github.com/pre-commit/mirrors-mypy: v1.6.0 → v1.6.1](pre-commit/mirrors-mypy@v1.6.0...v1.6.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@agoose77 @michaelweinold @pre-commit-ci
ci: test wider matrix (executablebooks#552)
fd1fc66 
* ci: test wider matrix

* chore: add more Trove classifiers for Python

* ci: fix quoting

* ci: fix interpolation

* ci: test fewer matrix elements

* ci: fix string → array

* ci: simplify matrix further

* ci: even more matrix work

* chore: bump myst-parser for ease

* chore: bump Sphinx version

* ci: fix lower bound

* initial commit (executablebooks#554)

* [pre-commit.ci] pre-commit autoupdate (executablebooks#553)

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.0.291 → v0.0.292](astral-sh/ruff-pre-commit@v0.0.291...v0.0.292)
- [github.com/pre-commit/mirrors-mypy: v1.5.1 → v1.6.0](pre-commit/mirrors-mypy@v1.5.1...v1.6.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Angus Hollands <[email protected]>

* [pre-commit.ci] pre-commit autoupdate (executablebooks#556)

updates:
- [github.com/psf/black: 23.9.1 → 23.10.0](psf/black@23.9.1...23.10.0)
- [github.com/astral-sh/ruff-pre-commit: v0.0.292 → v0.1.1](astral-sh/ruff-pre-commit@v0.0.292...v0.1.1)
- [github.com/pre-commit/mirrors-mypy: v1.6.0 → v1.6.1](pre-commit/mirrors-mypy@v1.6.0...v1.6.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* test: update test artefacts

* fix: read UTF-8

* docs: disable `navigation_with_keys`

* trigger RTD build

* docs: disable `navigation_with_keys`

---------

Co-authored-by: Michael Weinold <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@agoose77
chore: update project metadata
0ab3d6a
@agoose77
chore: make rc prefix
7dbdd31
agoose77 and others added 26 commits October 27, 2023 11:45
@agoose77
chore: update tests for newer matplotlib (executablebooks#559)
8428815 
* chore: update tests for newer matplotlib

* ci: fix matplotlib version

* test: update for matplotlib 3.7
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (executablebooks#561)
cdecf1d 
updates:
- [github.com/psf/black: 23.10.0 → 23.10.1](psf/black@23.10.0...23.10.1)
- [github.com/astral-sh/ruff-pre-commit: v0.1.1 → v0.1.3](astral-sh/ruff-pre-commit@v0.1.1...v0.1.3)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (executablebooks#564)
c89d452 
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.3 → v0.1.4](astral-sh/ruff-pre-commit@v0.1.3...v0.1.4)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@agoose77 @pre-commit-ci
maint: enable ruff formatter (executablebooks#565)
1d83433 
* maint: enable ruff formatter

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* fix: update typing

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@agoose77
maint: bump minimum Python version (executablebooks#566)
ec2e27e 
* maint: drop Python 3.8

* chore: bump tox too
@agoose77
feat: bump package version
16db9ce
@agoose77
chore: unpin jupyer-cache (executablebooks#567)
0526887
@agoose77
maint: uncap nbformat (executablebooks#568)
48edb5d
@agoose77
feat: update version to 1.0.0
af2d197
@agoose77
docs: update changelog
51e6afd
@agoose77
DOCS: improve changelog
0d110f2
@agoose77
MAINT: restore default line length (executablebooks#577)
6476744 
* MAINT: restore default line length

This larger limit was supposed to be for flake8 only

* MAINT: drop TODO
@dependabot
build(deps): bump actions/setup-python from 4 to 5 (executablebooks#576)
c3e015e 
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4...v5)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@agoose77
maint: use findall instead of traverse (executablebooks#585)
1efadf7 
* maint: use findall

* fix: add pyarrow test dep

* fix: remove deprecated code

* chore: update tests for new pins

* chore: pin pandas
@flying-sheep @pre-commit-ci @agoose77
Fix image metadata (executablebooks#588)
ac5f9b4 
* Fix image metadata

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* update remaining

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Angus Hollands <[email protected]>
@agoose77
chore: bump version (executablebooks#592)
9943ec2
@agoose77
FIX: remove incorrect license classifier (executablebooks#603)
7fd7a26
@jeertmans
fix(docs): extra comma forgotten (executablebooks#606)
e88706b 
Hello,

Just to mention that there is an extra comma in this example that makes this JSON invalid :-)
@agoose77 @pre-commit-ci
MAINT: fix specs for CI matrix (executablebooks#611)
3398d2e 
* ci: fix specs for dependencies

* chore: disable codecov upload for now

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@agoose77 @pre-commit-ci
MAINT: appease mypy (executablebooks#612)
d9556d0 
* maint: appease MyPy

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* chore: restore ignored type

* ci: disable pre-commit

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@agoose77
maint: fix dependency on pre-commit job
8cae00b
@aeisenbarth @agoose77 @flying-sheep
FIX: output metadata overwrites image size for all following images (e…
ecb3b6e 
…xecutablebooks#609)

* Add test case for image with output metadata and image without

* Make a copy of cell config before modifying

* Fix image metadata

---------

Co-authored-by: Angus Hollands <[email protected]>
Co-authored-by: Philipp A. <[email protected]>
@OriolAbril @agoose77
Update shown code to match source (executablebooks#598)
67f1643 
Co-authored-by: Angus Hollands <[email protected]>
@agoose77
docs: set printoptions to disable modern scalar printing (executableb…
2cab40e 
…ooks#613)
@agoose77
maint: bump version (executablebooks#614)
6ce30cd
@krassowski
Merge branch 'master' into add-cell-ids
79e8657
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