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added Neuronexus A1x16 probe #20

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added Neuronexus A1x16 probe #20

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11336c0
added Neuronexus A1x16 probe
neuromusic Mar 5, 2015
eb8db81
added Poly3-6mm-50
neuromusic Mar 12, 2015
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212 changes: 212 additions & 0 deletions data/probefiles/A1x32-Poly3-6mm-50.prb
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Original file line number Diff line number Diff line change
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# neuronexus sites correspond to the following channels (array indices)
#

# (3) (30)
# | \ / |
# (2)-(17)-(31)
# | / \ |
# (1)-(16)-(32)
# | \ / |
# (4)-(18)-(29)
# | / \ |
# (5)-(15)-(28)
# | \ / |
# (6)-(19)-(27)
# | / \ |
# (7)-(14)-(26)
# | \ / |
# (8)-(20)-(25)
# | / \ |
# (9)-(13)-(24)
# | \ / |
# (10)-(21)-(23)
# | / \ |
# (11)-(12)-(22)

# site:channel
# s = {1: 0,
# 2: 1,
# 3: 2,
# 4: 3,
# 5: 4,
# 6: 5,
# 7: 6,
# 8: 7,
# 9: 8,
# 10: 9,
# 11: 10,
# 12: 11,
# 13: 12,
# 14: 13,
# 15: 14,
# 16: 15,
# 17: 16,
# 18: 17,
# 19: 18,
# 20: 19,
# 21: 20,
# 22: 21,
# 23: 22,
# 24: 23,
# 25: 24,
# 26: 25,
# 27: 26,
# 28: 27,
# 29: 28,
# 30: 29,
# 31: 30,
# 32: 31,
# }
s = {11: 0,
12: 1,
22: 2,
10: 3,
21: 4,
23: 5,
9: 6,
13: 7,
24: 8,
8: 9,
20: 10,
25: 11,
7: 12,
14: 13,
26: 14,
6: 15,
19: 16,
27: 17,
5: 18,
15: 19,
28: 20,
4: 21,
18: 22,
29: 23,
1: 24,
16: 25,
32: 26,
2: 27,
17: 28,
31: 29,
3: 30,
30: 31,
}

channel_groups = {
# Shank index.
0:
{
# List of channels to keep for spike detection.
'channels': s.values(),

# Adjacency graph. Dead channels will be automatically discarded
# by considering the corresponding subgraph.
'graph': [
(s[3],s[2]), # column 0
(s[2],s[1]),
(s[1],s[4]),
(s[4],s[5]),
(s[5],s[6]),
(s[6],s[7]),
(s[7],s[8]),
(s[8],s[9]),
(s[9],s[10]),
(s[10],s[11]),
(s[17],s[16]), # column 1
(s[16],s[18]),
(s[18],s[15]),
(s[15],s[19]),
(s[19],s[14]),
(s[14],s[20]),
(s[20],s[13]),
(s[13],s[21]),
(s[21],s[12]),
(s[30],s[31]), # column 2
(s[31],s[32]),
(s[32],s[29]),
(s[29],s[28]),
(s[28],s[27]),
(s[27],s[26]),
(s[26],s[25]),
(s[25],s[24]),
(s[24],s[23]),
(s[23],s[22]),
(s[2],s[17]), # row 0
(s[17],s[31]),
(s[1],s[16]), # row 1
(s[16],s[32]),
(s[4],s[18]), # row 2
(s[18],s[29]),
(s[5],s[15]), # row 3
(s[15],s[28]),
(s[6],s[19]), # row 4
(s[19],s[27]),
(s[7],s[14]), # row 5
(s[14],s[26]),
(s[8],s[20]), # row 6
(s[20],s[25]),
(s[9],s[13]), # row 7
(s[13],s[24]),
(s[10],s[21]), # row 8
(s[21],s[23]),
(s[11],s[12]), # row 9
(s[12],s[22]),
(s[17],s[3]), # star 0
(s[17],s[30]),
(s[17],s[32]),
(s[17],s[1]),
(s[18],s[1]), # star 1
(s[18],s[32]),
(s[18],s[28]),
(s[18],s[5]),
(s[19],s[5]), # star 2
(s[19],s[28]),
(s[19],s[26]),
(s[19],s[7]),
(s[20],s[7]), # star 3
(s[20],s[26]),
(s[20],s[24]),
(s[20],s[9]),
(s[21],s[9]), # star 4
(s[21],s[24]),
(s[21],s[22]),
(s[21],s[11]),
],

# 2D positions of the channels, only for visualization purposes
# in KlustaViewa. The unit doesn't matter.
'geometry': {
s[3]: (0,500), # column 0
s[2]: (0,450),
s[1]: (0,400),
s[4]: (0,350),
s[5]: (0,300),
s[6]: (0,250),
s[7]: (0,200),
s[8]: (0,150),
s[9]: (0,100),
s[10]: (0,50),
s[11]: (0,0),
s[17]: (50,450), # column 1
s[16]: (50,400),
s[18]: (50,350),
s[15]: (50,300),
s[19]: (50,250),
s[14]: (50,200),
s[20]: (50,150),
s[13]: (50,100),
s[21]: (50,50),
s[12]: (50,0),
s[30]: (100,500), # column 2
s[31]: (100,450),
s[32]: (100,400),
s[29]: (100,350),
s[28]: (100,300),
s[27]: (100,250),
s[26]: (100,200),
s[25]: (100,150),
s[23]: (100,100),
s[23]: (100,50),
s[22]: (100,0),
}
}
}
91 changes: 91 additions & 0 deletions data/probefiles/Neuronexus_A1x16.prb
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Original file line number Diff line number Diff line change
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# Neuronexus A1x16-5mm50 probe

# neuronexus sites correspond to the following channels (array indices)

# site:channel
# s = {1: 0,
# 2: 1,
# 3: 2,
# 4: 3,
# 5: 4,
# 6: 5,
# 7: 6,
# 8: 7,
# 9: 8,
# 10: 9,
# 11: 10,
# 12: 11,
# 13: 12,
# 14: 13,
# 15: 14,
# 16: 15,
# }
s = {1: 4,
2: 6,
3: 2,
4: 10,
5: 8,
6: 0,
7: 12,
8: 14,
9: 15,
10: 13,
11: 1,
12: 9,
13: 11,
14: 3,
15: 7,
16: 5,
}


channel_groups = {
# Shank index.
0:
{
# List of channels to keep for spike detection.
'channels': s.values(),

# Adjacency graph. Dead channels will be automatically discarded
# by considering the corresponding subgraph.
'graph': [
(s[6], s[11]),
(s[11], s[3]),
(s[3], s[14]),
(s[14], s[10]),
(s[10], s[8]),
(s[8], s[2]),
(s[2], s[15]),
(s[15], s[5]),
(s[5], s[12]),
(s[12], s[4]),
(s[4], s[13]),
(s[13], s[7]),
(s[7], s[10]),
(s[10], s[8]),
(s[8], s[9]),
],

# 2D positions of the channels, in microns.
# NOTE: For visualization purposes
# in KlustaViewa, the unit doesn't matter.
'geometry': {
s[6]: (0, 0),
s[11]: (0, 50),
s[3]: (0, 100),
s[14]: (0, 150),
s[1]: (0, 200),
s[16]: (0, 250),
s[2]: (0, 300),
s[15]: (0, 350),
s[5]: (0, 400),
s[12]: (0, 450),
s[4]: (0, 500),
s[13]: (0, 550),
s[7]: (0, 600),
s[10]: (0, 650),
s[8]: (0, 700),
s[9]: (0, 750),
}
}
}