Bump version from 4.0.24 to 4.1.0

kkrismer · Mar 23, 2021 · 507d2f5 · 507d2f5
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Showing 5 changed files with 9 additions and 12 deletions.
diff --git a/README.md b/README.md
@@ -10,7 +10,7 @@ Scansite searches for motifs within proteins that are likely to be phosphorylate
 
 Putative protein phosphorylation sites can be further investigated by evaluating evolutionary conservation of the site sequence or subcellular colocalization of protein and kinase.
 
-Scansite 4 was developed with GWT 2.8.2, Java 1.8, and MySQL 5.7.
+The current version of Scansite was built with GWT 2.9.0, Java 11, and MySQL 8.
 
 ## About
 
@@ -45,4 +45,4 @@ If you use Scansite in your research, please cite:
 Scansite 2.0: proteome-wide prediction of cell signaling interactions using short sequence motifs  
 John C. Obenauer, Lewis C. Cantley, Michael B. Yaffe  
 Nucleic Acids Res. 2003 July 1; 31(13): 3635–3641.  
-PMID: [12824383](https://www.ncbi.nlm.nih.gov/pubmed/12824383)
+PMID: [12824383](https://www.ncbi.nlm.nih.gov/pubmed/12824383)
diff --git a/pom.xml b/pom.xml
@@ -12,7 +12,7 @@
 
 	<properties>
 		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
-		<revision>4.0.24-SNAPSHOT</revision>
+		<revision>4.1.0-SNAPSHOT</revision>
 	</properties>
 
 	<dependencyManagement>
@@ -39,9 +39,7 @@
 				<directory>${basedir}/src/main/resources</directory>
 			</resource>
 		</resources>
-		<finalName>4.0</finalName> <!-- domain access using scansite4.mit.edu/4.0/ -->
-		<!-- This way you can easily deploy various Scansite versions on a single 
-			machine just by editing the version number -->
+		<finalName>ROOT</finalName>
 		<outputDirectory>${project.build.directory}/${project.build.finalName}/WEB-INF/classes</outputDirectory>
 		<plugins>
 			<plugin>
@@ -61,7 +59,6 @@
 					<version>3.8.1</version>
 					<configuration>
 						<release>11</release>
-						<!-- <source>1.8</source> <target>1.8</target> -->
 					</configuration>
 				</plugin>
 				<plugin>

diff --git a/scansite-client/src/main/java/edu/mit/scansite/client/ui/presenter/PresenterFactory.java b/scansite-client/src/main/java/edu/mit/scansite/client/ui/presenter/PresenterFactory.java
@@ -107,7 +107,7 @@
  */
 public class PresenterFactory {
 	private static PresenterFactory instance;
-	private static final String titleSuffix = " - Scansite 4.0";
+	private static final String titleSuffix = " - Scansite 4";
 
 	private PresenterFactory() {
 	}

diff --git a/...ite-client/src/main/java/edu/mit/scansite/client/ui/view/tutorial/TutorialPageView.ui.xml b/...ite-client/src/main/java/edu/mit/scansite/client/ui/view/tutorial/TutorialPageView.ui.xml
@@ -7,7 +7,7 @@
 		<p>
 			The sections below give detailed instructions on how to use the programs that make up Scansite.</p>
 		<h3>
-			Navigation in Scansite 4.0
+			Navigation in Scansite 4
 		</h3>
 		<p>
 			The navigation bar on the left-hand side of this page allows you to navigate to all static

diff --git a/scansite-server/src/main/webapp/index.html b/scansite-server/src/main/webapp/index.html
@@ -4,7 +4,7 @@
 <head>
 <meta http-equiv="content-type" content="text/html; charset=UTF-8">
 <meta name="description"
-	content="Scansite 4.0 - kinase-substrate interaction prediction and short linear sequence motif discovery.">
+	content="Scansite 4 - kinase-substrate interaction prediction and short linear sequence motif discovery.">
 <meta name="keywords"
 	content="scansite,kinases,yaffe,protein,phosphorylation,prediction,binding,domain,ptm,scansite4,scansite3,scansite2,kinase,substrate,interaction,ehrenberger,krismer,bernwinkler">
 <meta name="author"
@@ -57,7 +57,7 @@
         });
     </script>
 
-<title>Scansite 4.0</title>
+<title>Scansite 4</title>
 </head>
 <body>
 	<!-- history support -->
@@ -98,7 +98,7 @@ <h1>Scansite</h1>
 					Feedback</a> - <a href="#admin">Administrator and Collaborator Area</a>
 			</p>
 			<p>
-				&copy; 2021 - Scansite 4.00.024 - <a target="_blank"
+				&copy; 2021 - Scansite 4.1.0 - <a target="_blank"
 					href="https://yaffelab.mit.edu/">Michael B. Yaffe Laboratory</a> -
 				Koch Institute, MIT
 			</p>