lifetime histo limits change #173
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name: j-pet-continuous-integration-tests | |
on: [push, pull_request] | |
jobs: | |
build_and_run_all_tests_on_ubuntu: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-16.04, ubuntu-18.04] | |
steps: | |
- uses: actions/checkout@v2 | |
with: | |
submodules: recursive | |
- name: system update | |
run: | | |
sudo apt-get -qq update | |
sudo apt-get install -y git libboost-all-dev libtbb-dev cmake libfftw3-3 libfftw3-dev sshpass | |
- name: set branch name | |
run: | | |
echo "GITHUB_REF=${GITHUB_REF}" | |
GITHUB_BRANCH=${GITHUB_REF##*\/} | |
if [ "${GITHUB_BRANCH}" = "master" ]; then echo "BRANCH=master" | tee ${GITHUB_ENV}; | |
else echo "BRANCH=develop" | tee ${GITHUB_ENV}; | |
fi | |
- name: download ROOT (for ubuntu 16.04) | |
run: | | |
wget https://root.cern/download/root_v6.12.06.Linux-ubuntu16-x86_64-gcc5.4.tar.gz | |
tar xzf root_v6.12.06.Linux-ubuntu16-x86_64-gcc5.4.tar.gz | |
if: matrix.os == 'ubuntu-16.04' | |
- name: download ROOT (for ubuntu-18.04) | |
run: | | |
wget http://sphinx.if.uj.edu.pl/framework/root-6-20-06-ubuntu18-jpet.tar.gz | |
tar xzf root-6-20-06-ubuntu18-jpet.tar.gz | |
if: matrix.os == 'ubuntu-18.04' | |
- name: build unpacker | |
run: | | |
source root/bin/thisroot.sh | |
git clone https://github.com/JPETTomography/Unpacker2.git --single-branch --branch ${BRANCH} unpacker | |
mkdir -p unpacker/build | |
cd unpacker/build | |
cmake .. | |
cmake --build . | |
sudo make install | |
cd ../.. | |
- name: build j-pet framework | |
run: | | |
source root/bin/thisroot.sh | |
source unpacker/build/bin/thisunpacker.sh | |
rm -rf j-pet-framework || true | |
git clone --single-branch --branch ${BRANCH} https://github.com/JPETTomography/j-pet-framework.git | |
mkdir -p j-pet-framework/build | |
cd j-pet-framework/build | |
cmake .. | |
cmake --build . | |
cd ../.. | |
- name: build framework examples | |
run: | | |
source root/bin/thisroot.sh | |
source unpacker/build/bin/thisunpacker.sh | |
source j-pet-framework/build/bin/thisframework.sh | |
mkdir build | |
cd build | |
cmake .. | |
make | |
make tests_largebarrel | |
make tests_imagereconstruction | |
- name: run image reconstruction test | |
run: | | |
source root/bin/thisroot.sh | |
source unpacker/build/bin/thisunpacker.sh | |
cd build/ImageReconstruction | |
ctest -j6 -C Debug -T test --output-on-failure | |
- name: run large barrel test | |
run: | | |
source root/bin/thisroot.sh | |
cd build/LargeBarrelAnalysis | |
ctest -j6 -C Debug -T test --output-on-failure | |
wget http://sphinx.if.uj.edu.pl/~alek/framework_integration_tests/dabc_17025151847.hld | |
wget http://sphinx.if.uj.edu.pl/~alek/framework_integration_tests/setupRun3.json | |
./LargeBarrelAnalysis.x -t hld -f dabc_17025151847.hld -l setupRun3.json -i 3 -r 0 100 | |
mkdir outdir | |
./LargeBarrelAnalysis.x -t hld -f dabc_17025151847.hld -l setupRun3.json -i 3 -r 0 100 -o outdir | |
./LargeBarrelAnalysis.x -t root -f dabc_17025151847.hld.root -l setupRun3.json -i 3 -r 0 100 | |
sed -i 's/manager.useTask("TimeWindowCreator", "hld", "tslot.calib");//' ../../LargeBarrelAnalysis/main.cpp | |
make LargeBarrelAnalysis.x | |
./LargeBarrelAnalysis.x -t root -f dabc_17025151847.tslot.calib.root -r 0 100 |