KFDRC Alignment and GATK HaplotypeCaller Workflows

KFDRC Sentieon Alignment Workflow

New to the KFDRC Alignment workflows is a Sentieon-based approach. Thanks to a collaboration with the people at Sentieon the KFDRC now provides a separate workflow that, while maintaining functional equivalence to our existing bwa and GATK based workflow, increases the computational speed and efficiency of our alignment process through the use of Sentieon software . The workflow has been written to maximally leverage the Cavatica platform and internal testing has shown a near doubling of throughput over our existing alignment workflow. More information on the similarities and differences between the two workflows can be found in our docs.

What's Changed

• 🎨 sbpack fixes by @dmiller15 in #119
• 🐎 sentieon wf by @dmiller15 in #120
• 📚 sentieon release prep by @dmiller15 in #121

Full Changelog: v2.7.3...v2.8.0